Styrofoam Cup x Fuzzy Melon #11
RSP 12983
Grower: Team Elite Genetics
General Information
- Sample Name
- S X FM #11 - 20231207
- Accession Date
- December 6, 2023
- Reported Plant Sex
- Female
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.
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This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).
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This chart represents the Illumina sequence coverage over the CBCA synthase gene.
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Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1540A>G | p.Thr514Ala | missense variant | moderate | contig2621 | 340818 | A/G | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3202A>C | p.Thr1068Pro | missense variant | moderate | contig2621 | 343245 | A/C |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.592A>G | p.Asn198Asp | missense variant | moderate | contig700 | 1951046 | T/C |
|
PKSG-2b | c.588T>G | p.Asp196Glu | missense variant | moderate | contig700 | 1951050 | A/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
DXR-2 | c.186A>T | p.Arg62Ser | missense variant | moderate | contig380 | 288577 | T/A |
|
FAD2-2 | c.378-1G>A | splice acceptor variant & intron variant | high | contig83 | 1802628 | C/T |
|
|
FAD2-2 | c.196T>C | p.Phe66Leu | missense variant | moderate | contig83 | 1803173 | A/G |
|
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.216A>T | p.Lys72Asn | missense variant | moderate | contig121 | 2828872 | A/T |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 | c.688G>A | p.Asp230Asn | missense variant | moderate | contig81 | 209650 | G/A |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1177G>A | p.Asp393Asn | missense variant | moderate | contig81 | 210139 | G/A |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
TFL1 | c.304G>A | p.Asp102Asn | missense variant & splice region variant | moderate | contig1636 | 520613 | C/T |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1381G>A | p.Asp461Asn | missense variant | moderate | contig1891 | 886367 | C/T |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
FT |
c.43_44insAT |
p.Asn14_Ser1 |
disruptive inframe insertion | moderate | contig1561 | 3124441 |
T/TTAATAATAA |
|
FT | c.190G>A | p.Val64Ile | missense variant | moderate | contig1561 | 3124614 | G/A |
|
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FT | c.333delG | p.Cys112fs | frameshift variant | high | contig1561 | 3126369 | TG/T |
|
FT |
c.421_422dup |
p.Leu142fs | frameshift variant | high | contig1561 | 3126659 | C/CTA |
|
FT | c.424C>A | p.Leu142Ile | missense variant | moderate | contig1561 | 3126663 | C/A |
|
PIE1-1 | c.100G>A | p.Glu34Lys | missense variant | moderate | contig1225 | 2277786 | G/A | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 |
c.1548_1549i |
p.Gln516_Glu |
conservative inframe insertion | moderate | contig1225 | 2281807 | A/AGAT | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 |
c.1850_1852d |
p.Met617dup | disruptive inframe insertion | moderate | contig93 | 3339945 | A/AGAT |
|
PKSB-3 | c.1901C>G | p.Ala634Gly | missense variant | moderate | contig93 | 3340008 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.091 Styrofoam Cup x Fuzzy Melon 1 (RSP12977)
- 0.190 Styrofoam Cup x Cuban Linx 1 (RSP12984)
- 0.192 Styrofoam Cup x Diesel Truck OG 16 (RSP12972)
- 0.194 Styrofoam Cup x Cuban Linx 6 (RSP12982)
- 0.203 Dominion Skunk (RSP11354)
- 0.213 NSPM x NSPM (RSP11487)
- 0.215 Pearadise x Pineapple Pez Melonade 6 (RSP12978)
- 0.217 Pearadise x Fuzzy Melon 14 (RSP12969)
- 0.219 Styrofoam Cup x Pineapple Pez Melonade 5 (RSP12979)
- 0.222 Pearadise x Fuzzy Melon 3 (RSP12985)
- 0.227 Sunday Driver (RSP11071)
- 0.227 RKM-2018-034 (RSP11126)
- 0.231 Serious Happiness (RSP10763)
- 0.231 SHERBERT (RSP11355)
- 0.231 Strawberry Cough (RSP11356)
- 0.232 El Presidente (RSP12807)
- 0.232 Hermaphrodite ResearchSample2 (RSP11050)
- 0.233 Watermelon Rush (RSP12908)
- 0.234 Wedding Pie (RSP11745)
- 0.239 Garlic (RSP11341)
Nearest genetic relatives (Base Tree)
- 0.233 RKM-2018-034 (RSP11126)
- 0.237 Hermaphrodite ResearchSample2 (RSP11050)
- 0.254 RKM-2018-022 (RSP11114)
- 0.262 Gold Cracker (RSP11048)
- 0.265 Skywalker OG (RSP10837)
- 0.271 Durban Poison (RSP11014)
- 0.277 Recon (RSP10755)
- 0.277 Pie Hoe (RSP11073)
- 0.282 RKM-2018-020 (RSP11112)
- 0.283 Blueberry Cheesecake (RSP10684)
- 0.284 Liberty Haze (RSP11000)
- 0.285 The Gift (RSP10988)
- 0.291 RKM-2018-023 (RSP11115)
- 0.292 RKM-2018-019 (RSP11111)
- 0.295 UP Sunrise (RSP10989)
- 0.296 CST (RSP11002)
- 0.296 RKM-2018-003 (RSP11094)
- 0.298 Queen Jesus (RSP10105)
- 0.300 RKM-2018-004 (RSP11096)
- 0.300 Kimbo Slice (RSP10997)
Most genetically distant strains (All Samples)
- 0.481 Cherry Blossom (RSP11323)
- 0.473 Cherry Blossom (RSP11328)
- 0.461 Cherry Blossom (RSP11318)
- 0.440 Tanao Sri 46 (RSP11486)
- 0.440 Cherry Blossom (RSP11301)
- 0.432 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.428 Unknown- Cherry Wine - 001 (RSP11268)
- 0.425 Cherry Blossom (RSP11309)
- 0.421 Cherry Blossom (RSP11325)
- 0.421 Cherry Blossom (RSP11300)
- 0.420 CBD2 V 2 (RSP12669)
- 0.418 Cherry Blossom (RSP11312)
- 0.410 AVIDEKEL 2 0 (RSP11174)
- 0.409 Unknown- Cherry Wine - 003 (RSP11270)
- 0.408 Avidekel 05MAY2017 (RSP10938)
- 0.407 Cherry Blossom (RSP11306)
- 0.405 Cherry Blossom (RSP11311)
- 0.404 Cherry Blossom (RSP11327)
- 0.403 Cherry Blossom (RSP11298)
- 0.401 Wife (RSP11148)
Most genetically distant strains (Base Tree)
- 0.387 Cbot-2019-001 (RSP11129)
- 0.383 Cbot-2019-005 (RSP11133)
- 0.379 Feral (RSP10890)
- 0.375 Cherry (RSP11143)
- 0.374 JL yellow (RSP11075)
- 0.366 RKM-2018-028 (RSP11120)
- 0.366 Monoica (RSP10241)
- 0.359 Carmagnola (RSP11037)
- 0.358 Tisza (RSP11044)
- 0.355 Futura 75 (RSP10664)
- 0.353 Lovrin (RSP10658)
- 0.352 Carmagnola (RSP10979)
- 0.352 Santhica27 (RSP11047)
- 0.347 USO 31 (RSP10981)
- 0.347 Jiangji (RSP10653)
- 0.346 Fedora 17 (RSP10661)
- 0.345 Cherry (RSP11142)
- 0.343 Black Beauty (RSP11035)
- 0.340 Cbot-2019-004 (RSP11132)
- 0.339 RKM-2018-006 (RSP11097)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 95
- Concordance:
- 65
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
36b192904829d496
44a5b61a777d410c c570ac734df66161 3fd3f6211bcfbc85 - Stamping Certificate
- Download PDF (39.6 KB)
- SHASUM Hash
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d74d1e121ae7bd5c
f2ff90ffa111a788 ba6eb9109d623e24 66a0dc8f906f3c6e