Cherry Blossom
RSP 11327
Grower: Yabba Cannaba
General Information
- Sample Name
- CH3
- Accession Date
- October 17, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.
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This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).
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This chart represents the Illumina sequence coverage over the CBCA synthase gene.
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Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.556A>G | p.Arg186Gly | missense variant & splice region variant | moderate | contig700 | 2721117 | T/C |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.170 Cherry Blossom (RSP11315)
- 0.173 Cherry Blossom (RSP11274)
- 0.173 Cherry Blossom (RSP11320)
- 0.180 Cherry Blossom (RSP11304)
- 0.192 Unknown--Cherry Wine---005- (RSP11272)
- 0.194 Cherry Blossom (RSP11322)
- 0.196 Electra (RSP11366)
- 0.198 Cherry Blossom (RSP11323)
- 0.208 Cherry Blossom (RSP11299)
- 0.212 Cherry Blossom (RSP11308)
- 0.217 Cherry Blossom (RSP11335)
- 0.223 Cherry Blossom (RSP11311)
- 0.223 Cherry Blossom (RSP11325)
- 0.224 Serious Happiness (RSP10763)
- 0.225 Doug s Varin (RSP11243)
- 0.226 Suver Haze (RSP11364)
- 0.227 Alaska 05MAY2017 (RSP10939)
- 0.227 Cherry Blossom (RSP11321)
- 0.228 Ringo s Angel (RSP10085)
- 0.228 Cherry Blossom (RSP11314)
Most genetically distant strains (All Samples)
- 0.476 White Label 1 (RSP11336)
- 0.464 Kush Hemp E1 (RSP11128)
- 0.460 Fatso (RSP11741)
- 0.458 80E (RSP11211)
- 0.455 80E (RSP11213)
- 0.454 GMO x Garlic Breath (RSP12507)
- 0.453 Right Mark (RSP11628)
- 0.453 BagSeed (RSP12501)
- 0.450 Abacus (RSP11266)
- 0.448 GG4 (RSP11978)
- 0.444 UP Wendigo (RSP11261)
- 0.443 Star Dawg (RSP11352)
- 0.441 BagSeed (RSP12627)
- 0.435 80E (RSP11212)
- 0.434 R3in134 (SRR14708220)
- 0.432 Dominion Skunk (RSP11354)
- 0.429 RKM-2018-002 (RSP11093)
- 0.429 RKM-2018-026 (RSP11118)
- 0.428 Skunk#18 (RSP11038)
- 0.428 GMO x [REDACTED] #43 (RSP11976)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 62
- Concordance:
- 35
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 7
- Concordance:
- 7
Blockchain Registration Information
- Transaction ID
-
47cf22410bfe350d
cfe9d39ca8f19bc6 3371c5627b0d81e7 bcf1afa830cadee9 - Stamping Certificate
- Download PDF (850.3 KB)
- SHASUM Hash
-
0c9d3157b2012378
c517ff52ff8238d9 5c8b60db54da3866 8bd703dcaf2db9be