Advanced Strain Search

Cherry Blossom

RSP 11311

Grower: Yabba Cannaba

General Information

Sample Name
CB7
Accession Date
October 16, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.08%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0482
male female RSP11311

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
FAD2-2

UniProt

c.47_57delTGAATCATACT p.Leu16fs frameshift variant high contig83 1803311

IGV: Start, Jump

GAGTATGATTCA/G
NGS:
0.018
C90:
0.000
HDS-2

UniProt

c.82_85delGTAA p.Val28fs frameshift variant high contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/CCCGGAACT
NGS:
0.002
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.179 Cherry Blossom (RSP11314)
  2. 0.186 Cherry Blossom (RSP11320)
  3. 0.205 Cherry Blossom (RSP11308)
  4. 0.205 Unknown--Cherry Wine---003- (RSP11270)
  5. 0.206 Cherry Blossom (RSP11334)
  6. 0.207 Cherry Blossom (RSP11335)
  7. 0.222 Cherry Blossom (RSP11332)
  8. 0.223 Cherry Blossom (RSP11327)
  9. 0.229 Unknown--Cherry Wine---001- (RSP11268)
  10. 0.233 Unknown--Cherry Wine---002- (RSP11269)
  11. 0.238 Unknown--Cherry Wine---005- (RSP11272)
  12. 0.248 Cherry Blossom (RSP11319)
  13. 0.251 Cherry Blossom (RSP11310)
  14. 0.253 Cherry Blossom (RSP11312)
  15. 0.257 Cherry Blossom (RSP11274)
  16. 0.257 Cherry Blossom (RSP11316)
  17. 0.258 Cherry Blossom (RSP11321)
  18. 0.261 Unknown--Cherry Wine---004- (RSP11271)
  19. 0.261 Cherry Blossom (RSP11300)
  20. 0.264 13 Cherries (RSP11442)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
closely related moderately related distantly related
  1. 0.506 RKM-2018-009 (RSP11100)
  2. 0.499 JL yellow (RSP11075)
  3. 0.494 OR 05MAY2017 (RSP10940)
  4. 0.494 GG4 (RSP11978)
  5. 0.490 Hermaphrodite Research Sample1 (RSP11042)
  6. 0.487 RKM-2018-018 (RSP11110)
  7. 0.485 B52 (SRR14708255)
  8. 0.482 Italian Kiss (RSP11034)
  9. 0.481 Hermaphrodite Research Sample1 (RSP11049)
  10. 0.480 JL 4th Gen 6 (RSP11200)
  11. 0.478 Alpine Rocket (SRR14708266)
  12. 0.478 Jacks Cleaner (RSP11347)
  13. 0.476 JL 4th Gen 5 (RSP11199)
  14. 0.476 Center Mark (RSP11629)
  15. 0.475 JL 3rd Gen Mother (RSP11214)
  16. 0.475 Bordello (RSP11228)
  17. 0.475 Italian Kiss (RSP10990)
  18. 0.475 RKM-2018-002 (RSP11093)
  19. 0.474 Tanao Sri -46- (RSP11486)
  20. 0.473 UP Wendigo (RSP11261)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448735
Overlapping SNPs:
65
Concordance:
38

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495242
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
6beee48f523b0f492b28d6a40867e5f432fcac5df6d3697595230956f91b4d2e
Stamping Certificate
Download PDF (859.3 KB)
SHASUM Hash
b882f74ff76e573c01b9c8e868b21f8241628e090d53034e885a4ee1569192a0
QR code for RSP11311

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