Advanced Strain Search

RKM-2018-002

RSP 11093

Grower: R-Kiem Seeds

General Information

Accession Date
September 6, 2018
Reported Plant Sex
Female
DNA Extracted From
Unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.77%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0423
male female RSP11093

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.112 Sour D (RSP11343)
  2. 0.124 Motor Breath #15 (RSP12093)
  3. 0.130 New York City Deisel (RSP11225)
  4. 0.135 East Coast Sour Diesel (RSP10243)
  5. 0.137 501st OG (RSP11241)
  6. 0.144 Super Sour Diesel (RSP11191)
  7. 0.152 CHEM4 (RSP12090)
  8. 0.156 Star Dawg (RSP11352)
  9. 0.158 RKM-2018-012 (RSP11103)
  10. 0.171 Dave Alaska (RSP11627)
  11. 0.177 Mother s Milk No 31 (RSP11623)
  12. 0.178 Rugburn OG (RSP11353)
  13. 0.181 Abacus (RSP11266)
  14. 0.183 Fatso (RSP11741)
  15. 0.184 Chem 91 (RSP11185)
  16. 0.184 Dog Patch (RSP11725)
  17. 0.191 RKM-2018-004 (RSP11095)
  18. 0.193 RKM-2018-004 (RSP11096)
  19. 0.203 Mothers Milk #5 (RSP11186)
  20. 0.213 Pure Power Plant (RSP11265)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
closely related moderately related distantly related
  1. 0.508 Northern Skunk (RSP11456)
  2. 0.481 Cherry Blossom (RSP11333)
  3. 0.475 JL 3rd Gen Father (RSP11196)
  4. 0.475 Cherry Blossom (RSP11311)
  5. 0.474 Cherry Blossom (RSP11317)
  6. 0.474 Cherry Blossom (RSP11324)
  7. 0.470 Cherry Blossom (RSP11314)
  8. 0.465 Unknown--Cherry Wine---001- (RSP11268)
  9. 0.457 Cherry Blossom (RSP11318)
  10. 0.455 JL 4th Gen 5 (RSP11199)
  11. 0.454 80E (RSP11213)
  12. 0.453 Tiger Tail -30- (RSP11484)
  13. 0.452 Cherry Blossom (RSP11322)
  14. 0.452 Cherry Blossom (RSP11325)
  15. 0.451 Cherry Blossom (RSP11308)
  16. 0.451 Cherry Blossom (RSP11300)
  17. 0.449 Unknown--Cherry Wine---002- (RSP11269)
  18. 0.449 Cherry Blossom (RSP11306)
  19. 0.448 Unknown--Cherry Wine---005- (RSP11272)
  20. 0.448 Cherry Blossom (RSP11301)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349234
Overlapping SNPs:
113
Concordance:
88

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
5324a79203d07b33f8dd0406f6772b4c171f01d9f35f85d6ab5afb30a194877b
Stamping Certificate
Download PDF (844.9 KB)
SHASUM Hash
b6fe1e5490427984d02360591b88f2c8aed4cf0b44e4f2e5b4efee46000f7ddc
QR code for RSP11093

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