Cherry Blossom
RSP 11325
Grower: Yabba Cannaba
General Information
- Sample Name
- CK5
- Accession Date
- October 17, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.
![](https://kannapedia.nyc3.cdn.digitaloceanspaces.com/media/reports/gender/rsp11325-gender-y-ratio.png)
This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).
![](https://kannapedia.nyc3.cdn.digitaloceanspaces.com/media/reports/gene-coverage/rsp11325-gene-depth-active-cbdas.png)
![](https://kannapedia.nyc3.cdn.digitaloceanspaces.com/media/reports/gene-coverage/rsp11325-gene-depth-active-thcas.png)
![](https://kannapedia.nyc3.cdn.digitaloceanspaces.com/media/reports/gene-coverage/rsp11325-gene-depth-inactive-cbdas.png)
This chart represents the Illumina sequence coverage over the CBCA synthase gene.
![](https://kannapedia.nyc3.cdn.digitaloceanspaces.com/media/reports/gene-coverage/rsp11325-gene-depth-cbcas.png)
Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
Nearest genetic relatives (All Samples)
- 0.070 Cherry Blossom (RSP11315)
- 0.105 Cherry Blossom (RSP11306)
- 0.150 Unknown--Cherry Wine---005- (RSP11272)
- 0.173 Cherry Blossom (RSP11332)
- 0.201 Unknown--Cherry Wine---004- (RSP11271)
- 0.209 Wife (RSP11148)
- 0.210 Cherry Blossom CBG (RSP11303)
- 0.210 Cherry Blossom (RSP11320)
- 0.212 Cherry Blossom (RSP11322)
- 0.213 Cherry Blossom (RSP11299)
- 0.215 Electra (RSP11366)
- 0.219 Calm (RSP11379)
- 0.220 Cherry Blossom (RSP11329)
- 0.223 Cherry Blossom (RSP11327)
- 0.226 Lift (RSP11378)
- 0.229 Cherry Blossom (RSP11316)
- 0.239 Cherry Blossom (RSP11324)
- 0.242 QLF4 (RSP11441)
- 0.243 Blue Dream (RSP11010)
- 0.243 Lifter (RSP11365)
Most genetically distant strains (All Samples)
- 0.492 Star Dawg (RSP11352)
- 0.491 BagSeed (RSP12501)
- 0.486 BagSeed (RSP12627)
- 0.481 Fatso (RSP11741)
- 0.479 CHEM4 (RSP12090)
- 0.477 GMO x [REDACTED] #43 (RSP11976)
- 0.474 Garlic (RSP11341)
- 0.469 Right Mark (RSP11628)
- 0.466 Cherry Lime Runtz (RSP12486)
- 0.461 Red Eye OG (RSP11190)
- 0.460 Juicy Gummy x Royal Kush (RSP12484)
- 0.457 Abacus (RSP11266)
- 0.455 R3in134 (SRR14708218)
- 0.452 RKM-2018-002 (RSP11093)
- 0.450 wo wo (RSP11417)
- 0.449 JL 3rd Gen Father (RSP11196)
- 0.449 JL 4th Gen 2 (RSP11194)
- 0.449 R3in134 (SRR14708220)
- 0.448 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
- 0.447 GMO (RSP12091)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 64
- Concordance:
- 39
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
0b23efe3d0bf9e14
e9da31d44d7ad093 def4d3e7575cf233 05c14814d0f82d2f - Stamping Certificate
- Download PDF (839.6 KB)
- SHASUM Hash
-
039129b5dc2a6652
60d69af1cb21e6db e94745fa290782c7 a0650a8bcd88a2e1