Advanced Strain Search

Cherry Blossom

RSP 11316

Grower: Yabba Cannaba

General Information

Sample Name
CC4
Accession Date
October 16, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.14%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0549
male female RSP11316

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.104 Cherry Blossom (RSP11320)
  2. 0.151 Cherry Blossom (RSP11319)
  3. 0.155 Cherry Blossom (RSP11299)
  4. 0.157 Electra (RSP11366)
  5. 0.166 Cherry Blossom (RSP11315)
  6. 0.172 Lift (RSP11378)
  7. 0.177 Cherry Blossom (RSP11274)
  8. 0.182 Cherry Blossom (RSP11312)
  9. 0.185 Unknown--Cherry Wine---005- (RSP11272)
  10. 0.193 Joy (RSP11380)
  11. 0.195 Unknown--Cherry Wine---002- (RSP11269)
  12. 0.198 Cherry Blossom (RSP11308)
  13. 0.198 Cherry Blossom (RSP11335)
  14. 0.200 Blueberry Cheesecake (RSP10684)
  15. 0.204 Cherry Blossom (RSP11302)
  16. 0.210 Queen Dream CBG (RSP11286)
  17. 0.213 Doug s Varin (RSP11243)
  18. 0.214 Cherry Blossom (RSP11326)
  19. 0.215 Cherry Blossom (RSP11304)
  20. 0.216 Serious Happiness (RSP10763)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.461 80E (RSP11213)
  2. 0.455 White Label 1 (RSP11336)
  3. 0.449 Fatso (RSP11741)
  4. 0.448 80E (RSP11211)
  5. 0.448 Abacus (RSP11266)
  6. 0.447 JL yellow (RSP11075)
  7. 0.444 R1in136 (SRR14708226)
  8. 0.438 JL 3rd Gen Father (RSP11196)
  9. 0.437 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
  10. 0.432 R3in134 (SRR14708218)
  11. 0.431 80E (RSP11212)
  12. 0.431 Chem 91 (RSP11185)
  13. 0.430 Northern Lights (RSP11501)
  14. 0.429 Star Dawg (RSP11352)
  15. 0.427 JL 4th Gen 5 (RSP11199)
  16. 0.424 RKM-2018-026 (RSP11118)
  17. 0.422 R3in134 (SRR14708220)
  18. 0.421 BagSeed (RSP12501)
  19. 0.421 Bialobrzeskie (SRR14708244)
  20. 0.421 Juso14 (SRR14708259)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347055
Overlapping SNPs:
64
Concordance:
37

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
c80cb08a1997c56a485352fef5e42a21249d5423fbd4f469c9dfa305409ca936
Stamping Certificate
Download PDF (859.1 KB)
SHASUM Hash
95b569618456ec1bd3d132c76c3513bd04c570f30b698827dac9232bb3ca0e1c
QR code for RSP11316

Kannapedia uses cookies

By clicking Allow All, you agree to the storing of cookies on your device to enhance site navigation, analyze site usage, and assist in our marketing efforts.

Customize Settings