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RSP 11336

Grower: The Hells Canyon Hydroponics Company

General Information

Sample Name
THCCO 1
Accession Date
October 17, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.95%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0408
male female RSP11336

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
THCAS c.1229G>A p.Gly410Glu missense variant moderate contig741 4416599

IGV: Start, Jump

C/T
NGS:
0.039
C90:
0.000
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632
THCAS c.373G>C p.Val125Leu missense variant moderate contig741 4417455

IGV: Start, Jump

C/G
NGS:
0.050
C90:
0.000

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.175 Headcheese (RSP11192)
  2. 0.179 RKM-2018-025 (RSP11117)
  3. 0.180 RKM-2018-016 (RSP11108)
  4. 0.184 BLACK JACK (RSP11346)
  5. 0.191 Black Jack (RSP10603)
  6. 0.203 RKM-2018-027 (RSP11119)
  7. 0.216 Saint Jack (RSP11179)
  8. 0.225 Gold Cracker (RSP11048)
  9. 0.242 Gold Cracker (RSP11041)
  10. 0.242 Tangerine Haze (RSP10995)
  11. 0.245 Cheese (RSP10460)
  12. 0.246 Durban Poison (RSP10998)
  13. 0.247 Durban Poison #1 (RSP10996)
  14. 0.251 CST (RSP11002)
  15. 0.254 Durban Poison #1 (RSP11013)
  16. 0.255 Power Plant (RSP11223)
  17. 0.256 Durban Poison (RSP11014)
  18. 0.260 Dominion Skunk (RSP11354)
  19. 0.261 Durban Poison (RSP11226)
  20. 0.267 UP Sunrise (RSP10989)

Most genetically distant strains (All Samples)

0 0.142 0.283 0.425 0.567
closely related moderately related distantly related
  1. 0.536 Cherry Blossom (RSP11323)
  2. 0.487 Cherry Blossom (RSP11274)
  3. 0.483 Cherry Blossom (RSP11312)
  4. 0.476 Cherry Blossom (RSP11327)
  5. 0.467 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  6. 0.462 Cherry Blossom (RSP11309)
  7. 0.460 Tanao Sri -46- (RSP11486)
  8. 0.458 Cherry Blossom (RSP11298)
  9. 0.457 Cherry Blossom (RSP11328)
  10. 0.455 Cherry Blossom (RSP11316)
  11. 0.454 Cherry Blossom (RSP11318)
  12. 0.451 Cherry Blossom (RSP11330)
  13. 0.450 Cherry Blossom (RSP11331)
  14. 0.446 Cherry Blossom CBG (RSP11303)
  15. 0.443 Cherry Blossom (RSP11306)
  16. 0.443 Cherry Blossom (RSP11314)
  17. 0.443 Avidekel 05MAY2017 (RSP10938)
  18. 0.440 Cherry Blossom (RSP11299)
  19. 0.438 Cherry Blossom (RSP11315)
  20. 0.437 R1 (RSP11483)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349288
Overlapping SNPs:
66
Concordance:
64

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495274
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
e31e1f2be73d735fd084c979e423d45b61ebb93a9c8688f41a837da2aa54d42e
Stamping Certificate
Download PDF (858.1 KB)
SHASUM Hash
d5ed692af64425f7dd5867aaf192a791e6d077e55e62014a722b7e288b79709d
QR code for RSP11336

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