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RSP 10460

Grower: CoffeShop 137

General Information

Accession Date
October 30, 2016
Reported Plant Sex
not reported
DNA Extracted From
Unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.46%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0493
male female RSP10460

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.036 RKM-2018-003 (RSP11094)
  2. 0.152 Black Jack (RSP10603)
  3. 0.153 Northern Lights (RSP11501)
  4. 0.155 BLACK JACK (RSP11346)
  5. 0.163 RKM-2018-025 (RSP11117)
  6. 0.165 RKM-2018-016 (RSP11108)
  7. 0.167 Serious Happiness (RSP10763)
  8. 0.168 Durban Poison #1 (RSP10996)
  9. 0.172 Blue Dream (RSP11010)
  10. 0.175 RKM-2018-020 (RSP11112)
  11. 0.179 Electra (RSP11366)
  12. 0.181 Domnesia (RSP11184)
  13. 0.182 Durban Poison #1 (RSP11013)
  14. 0.184 Doug s Varin (RSP11243)
  15. 0.186 RKM-2018-027 (RSP11119)
  16. 0.187 RKM-2018-030 (RSP11122)
  17. 0.187 Top 44 (SRR14708268)
  18. 0.188 Saint Jack (RSP11179)
  19. 0.188 Blue Dream (RSP11004)
  20. 0.188 Super Blue Dream (RSP11011)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
closely related moderately related distantly related
  1. 0.420 Cherry Blossom (RSP11323)
  2. 0.409 Feral (RSP11205)
  3. 0.408 80E (RSP11213)
  4. 0.398 Cherry Blossom (RSP11314)
  5. 0.394 Cherry Blossom (RSP11317)
  6. 0.392 CS (RSP11208)
  7. 0.390 Cherry Blossom (RSP11298)
  8. 0.390 Cherry Blossom (RSP11311)
  9. 0.389 Cherry Blossom (RSP11328)
  10. 0.389 Feral (RSP11206)
  11. 0.387 Carmaleonte (RSP11207)
  12. 0.386 Feral (RSP10892)
  13. 0.385 80E (RSP11211)
  14. 0.385 R1in136 (SRR14708227)
  15. 0.384 R3in134 (SRR14708218)
  16. 0.383 Cherry Blossom (RSP11333)
  17. 0.381 Feral (RSP10891)
  18. 0.380 R1in136 (SRR14708226)
  19. 0.380 XBL1 (SRR14708207)
  20. 0.379 Feral (RSP10890)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448559
Overlapping SNPs:
72
Concordance:
70

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495213
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
2820ae77d6a189c413a95c5065b47352deae6e1ab0ff9618c945a22800703dde
Stamping Certificate
Download PDF (862.8 KB)
SHASUM Hash
5f79636e25d08064ac7abe8f9ec01259385e693fa29914279d3a9c8274f3a4c6
QR code for RSP10460

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