Cherry Blossom
RSP 11333
Grower: Yabba Cannaba
General Information
- Sample Name
- CG2
- Accession Date
- October 17, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.
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This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).
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This chart represents the Illumina sequence coverage over the CBCA synthase gene.
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Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.8G>A | p.Cys3Tyr | missense variant | moderate | contig1772 | 2082234 | G/A |
|
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C |
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.088 Cherry Blossom (RSP11324)
- 0.112 Cherry Blossom (RSP11313)
- 0.158 Cherry Blossom (RSP11302)
- 0.184 Cherry Blossom (RSP11314)
- 0.190 Cherry Blossom (RSP11331)
- 0.195 Unknown--Cherry Wine---005- (RSP11272)
- 0.209 Cherry Blossom (RSP11299)
- 0.221 Cherry Blossom (RSP11322)
- 0.226 Cherry Blossom (RSP11310)
- 0.226 Cherry Blossom (RSP11317)
- 0.237 Cherry Wine (RSP11267)
- 0.238 Cherry Blossom (RSP11330)
- 0.245 Lift (RSP11378)
- 0.246 Electra (RSP11366)
- 0.249 Cherry (RSP11142)
- 0.250 Cherry Blossom (RSP11329)
- 0.251 13 Cherries (RSP11442)
- 0.252 Cherry Blossom (RSP11332)
- 0.254 Cherry Blossom (RSP11320)
- 0.255 Cherry Blossom (RSP11308)
Most genetically distant strains (All Samples)
- 0.515 JL 3rd Gen Mother (RSP11214)
- 0.499 JL yellow (RSP11075)
- 0.484 Tanao Sri -46- (RSP11486)
- 0.481 RKM-2018-002 (RSP11093)
- 0.478 Chem 91 (RSP11185)
- 0.472 JL 3rd Gen Mother (RSP11197)
- 0.472 Sour Raspberry (RSP10551)
- 0.466 JL 4th Gen 6 (RSP11200)
- 0.462 JL 4th Gen 5 (RSP11199)
- 0.460 JL 4th Gen 1 (RSP11193)
- 0.459 JL x NSPM1 4 (RSP11482)
- 0.457 Northern Lights (RSP11501)
- 0.452 RKM-2018-024 (RSP11116)
- 0.450 RKM-2018-018 (RSP11110)
- 0.447 OG BSR (RSP12105)
- 0.446 RKM-2018-023 (RSP11115)
- 0.445 JL 4th Gen 3 (RSP11195)
- 0.445 Skunk#18 (RSP11030)
- 0.445 Danny Noonan (RSP11070)
- 0.444 Avidekel 05MAY2017 (RSP10938)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 66
- Concordance:
- 42
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4
Blockchain Registration Information
- Transaction ID
-
0cbb19383d330fe0
74847c96b4baf29f a99e26b29c1fc859 d36657596f37c882 - Stamping Certificate
- Download PDF (863.0 KB)
- SHASUM Hash
-
02259df9b6c3f62e
bfbd2c2e5ab6388f d6d5565a4d94228c 13b446fb63d7fea4