Advanced Strain Search

JL yellow

RSP 11075

Grower: Emerald pharms

General Information

Accession Date
June 12, 2018
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.21%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0273
male female RSP11075

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.001 JL 3rd Gen Mother (RSP11197)
  2. 0.003 JL 3rd Gen Mother (RSP11214)
  3. 0.140 JL 4th Gen 1 (RSP11193)
  4. 0.165 JL 4th Gen 5 (RSP11199)
  5. 0.168 JL 4th Gen 2 (RSP11194)
  6. 0.172 JL 4th Gen 6 (RSP11200)
  7. 0.178 JL 4th Gen 3 (RSP11195)
  8. 0.179 JL 4th Gen 4 (RSP11198)
  9. 0.205 Original Jamaican Lions (RSP11127)
  10. 0.228 JL X NSPM1 12 (RSP11472)
  11. 0.232 JL x NSPM1 4 (RSP11482)
  12. 0.243 JL 4th Gen 7 (RSP11153)
  13. 0.261 JL Tent 4 (RSP11491)
  14. 0.266 JL X NSPM1 8 (RSP11470)
  15. 0.266 JL Tent 1 yellow stake (RSP11488)
  16. 0.276 JL Tent 2 (RSP11489)
  17. 0.277 Swaziland (SRR14708271)
  18. 0.282 JL Tent 3 (RSP11490)
  19. 0.282 Blue Dream (RSP11342)
  20. 0.291 Blue Dream (RSP11005)

Most genetically distant strains (All Samples)

0 0.142 0.283 0.425 0.567
closely related moderately related distantly related
  1. 0.540 JL Cross 14 (RSP11515)
  2. 0.538 GMO x Poison Momosa (RSP12626)
  3. 0.527 JL Cross 6 (RSP11507)
  4. 0.526 BagSeed (RSP12627)
  5. 0.513 Cherry Blossom (RSP11335)
  6. 0.512 Cherry Blossom (RSP11308)
  7. 0.508 Red Eye OG (RSP11190)
  8. 0.505 CS (RSP11208)
  9. 0.501 80E (RSP11213)
  10. 0.500 Wedding Cake x MAC (RSP11464)
  11. 0.499 Cherry Blossom (RSP11311)
  12. 0.499 Cherry Blossom (RSP11333)
  13. 0.499 Deadhead OG (RSP11463)
  14. 0.495 Fatso (RSP11741)
  15. 0.494 JL Cross 11 (RSP11512)
  16. 0.492 80E (RSP11211)
  17. 0.492 CHEM4 (RSP12090)
  18. 0.492 JL Cross 10 (RSP11511)
  19. 0.489 Feral (RSP11205)
  20. 0.486 Cherry Blossom (RSP11312)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349056
Overlapping SNPs:
118
Concordance:
70

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495260
Overlapping SNPs:
16
Concordance:
10

Blockchain Registration Information

Transaction ID
5f81e9ad9c605c74d19b071dd930e29be21bc0094f203ee7e0b60035441cd776
Stamping Certificate
Download PDF (843.3 KB)
SHASUM Hash
39eeea216b2081b8e97c0c597ee8a9742c0c79d205adec3d1be63e6a10f94135
QR code for RSP11075

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