Advanced Strain Search

Blue Dream

RSP 11342

Grower: Happy Valley

Summary

Blue Dream (RSP11342/Happy Valley) is a genetic Type I plant and its genetics appear common. The sample's closest relative in the database is Blue Dream (RSP11005/Native Roots) and it is a probable clone. The heterozygosity rate is 0.91% which is lower than average (15.9 percentile).

General Information

Accession Date
October 17, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.91%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0422
male female RSP11342

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
aPT4

UniProt

c.35A>C p.Gln12Pro missense variant moderate contig121 2828691

IGV: Start, Jump

A/C
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.000 Blue Dream (RSP11005)
  2. 0.000 Blue Dream (RSP11008)
  3. 0.000 Blue Dream (RSP11012)
  4. 0.000 Blue Dream (RSP11227)
  5. 0.001 Blue Dream (RSP11032)
  6. 0.001 Snoops Dream (RSP11003)
  7. 0.002 Blue Dream (RSP11033)
  8. 0.002 Snoops Dream (RSP11031)
  9. 0.003 Blue Dream (RSP11017)
  10. 0.004 Blue Dream (RSP11009)
  11. 0.004 Blue Dream (RSP11007)
  12. 0.007 Super Blue Dream (RSP11011)
  13. 0.007 Blue Dream (RSP11004)
  14. 0.009 Blue Dream (RSP11010)
  15. 0.009 Blue Dream (RSP11006)
  16. 0.178 Serious Happiness (RSP10763)
  17. 0.187 UP Sunrise (RSP10989)
  18. 0.193 OR 05MAY2017 (RSP10940)
  19. 0.194 Italian Kiss (RSP10990)
  20. 0.194 Golden Goat 2 (RSP10991)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.468 Cherry Blossom (RSP11311)
  2. 0.464 Cherry Blossom (RSP11328)
  3. 0.441 BagSeed (RSP12627)
  4. 0.440 Cherry Blossom (RSP11312)
  5. 0.437 Cherry Blossom (RSP11298)
  6. 0.434 Cherry Blossom (RSP11314)
  7. 0.427 Cherry Blossom (RSP11317)
  8. 0.427 Cherry Blossom (RSP11309)
  9. 0.426 Cherry Blossom (RSP11334)
  10. 0.424 Cherry Blossom (RSP11323)
  11. 0.423 Unknown--Cherry Wine---003- (RSP11270)
  12. 0.418 Cherry Blossom (RSP11335)
  13. 0.417 Cherry Blossom (RSP11308)
  14. 0.411 Candy Kush (RSP11492)
  15. 0.405 CS (RSP11208)
  16. 0.404 Unknown--Cherry Wine---001- (RSP11268)
  17. 0.402 Tiger Tail -30- (RSP11484)
  18. 0.401 Carmaleonte (RSP11207)
  19. 0.400 Cherry Blossom (RSP11330)
  20. 0.400 Cherry Blossom (RSP11333)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448372
Overlapping SNPs:
66
Concordance:
65

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495273
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
c456ab2e1e5c9a60bf4cf3bf3ca8a18c125a3139ef28354a9b2b52ca69d1bcd8
Stamping Certificate
Download PDF (868.3 KB)
SHASUM Hash
b4897c20a37189cece3dc1e19846756e1bc4abde41e9529cd2c21b7d46f39029
QR code for RSP11342

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