Advanced Strain Search

Snoops Dream

RSP 11003

Grower: Avitas

General Information

Accession Date
September 17, 2017
Reported Plant Sex
Female
DNA Extracted From
Flower

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
20.4%
CBD + CBDA
0.09%
THCV + THCVA
n/a
CBC + CBCA
n/a
CBG + CBGA
n/a
CBN + CBNA
n/a

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.75%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0385
male female RSP11003

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.000 Blue Dream (RSP11012)
  2. 0.001 Blue Dream (RSP11342)
  3. 0.001 Blue Dream (RSP11008)
  4. 0.001 Blue Dream (RSP11227)
  5. 0.002 Super Blue Dream (RSP11011)
  6. 0.002 Blue Dream (RSP11032)
  7. 0.002 Blue Dream (RSP11005)
  8. 0.002 Blue Dream (RSP11007)
  9. 0.003 Blue Dream (RSP11033)
  10. 0.004 Snoops Dream (RSP11031)
  11. 0.005 Blue Dream (RSP11009)
  12. 0.005 Blue Dream (RSP11017)
  13. 0.005 Blue Dream (RSP11004)
  14. 0.006 Blue Dream (RSP11010)
  15. 0.009 Blue Dream (RSP11006)
  16. 0.154 Serious Happiness (RSP10763)
  17. 0.179 Golden Goat 2 (RSP10991)
  18. 0.184 Doug s Varin (RSP11243)
  19. 0.187 UP Sunrise (RSP10989)
  20. 0.192 UnObtanium (RSP11611)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.446 Cherry Blossom (RSP11328)
  2. 0.439 Cherry Blossom (RSP11311)
  3. 0.417 Cherry Blossom (RSP11312)
  4. 0.416 BagSeed (RSP12627)
  5. 0.414 Cherry Blossom (RSP11298)
  6. 0.414 80E (RSP11213)
  7. 0.414 Cherry Blossom (RSP11314)
  8. 0.411 Cherry Blossom (RSP11323)
  9. 0.408 Carmaleonte (RSP11207)
  10. 0.408 CS (RSP11208)
  11. 0.405 Cherry Blossom (RSP11309)
  12. 0.402 Unknown--Cherry Wine---003- (RSP11270)
  13. 0.401 Cherry Blossom (RSP11317)
  14. 0.400 CS Indica (RSP11658)
  15. 0.399 80E (RSP11212)
  16. 0.399 80E (RSP11211)
  17. 0.398 Feral (RSP11205)
  18. 0.397 Unknown--Cherry Wine---001- (RSP11268)
  19. 0.395 YMCM (RSP11416)
  20. 0.394 Cherry Blossom (RSP11308)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448372
Overlapping SNPs:
109
Concordance:
107

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495218
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
9780e586673d84df6a4e70a28c714e50ad1c879de1fd0f08819f10af7dac997f
Stamping Certificate
Download PDF (854.3 KB)
SHASUM Hash
7034372c60eb3706897de0ebfd8f1c429ac8a686d02d9c9b4a2284e364dd154b
QR code for RSP11003

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