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Unknown-(Cherry Wine)-(003)

RSP 11270

Grower: Keaton Baker

General Information

Sample Name
Odyssey-003
Accession Date
September 26, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.02%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0408
male female RSP11270

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
GPPs1

UniProt

c.845_848delAAAG p.Glu282fs frameshift variant high contig676 169629

IGV: Start, Jump

TGAAA/T
NGS:
0.118
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.112 Cherry Blossom (RSP11298)
  2. 0.114 Cherry Blossom (RSP11309)
  3. 0.115 Unknown--Cherry Wine---002- (RSP11269)
  4. 0.150 Cherry Blossom (RSP11312)
  5. 0.181 Cherry Blossom (RSP11320)
  6. 0.188 Cherry Blossom (RSP11332)
  7. 0.189 Unknown--Cherry Wine---004- (RSP11271)
  8. 0.195 Cherry Blossom (RSP11328)
  9. 0.204 Unknown--Cherry Wine---005- (RSP11272)
  10. 0.204 Unknown--Cherry Wine---001- (RSP11268)
  11. 0.205 Cherry Blossom (RSP11311)
  12. 0.217 Cherry Blossom (RSP11310)
  13. 0.219 Cherry Blossom (RSP11316)
  14. 0.233 Cherry Blossom (RSP11335)
  15. 0.235 Cherry Blossom (RSP11308)
  16. 0.241 Cherry Blossom (RSP11327)
  17. 0.244 Cherry Blossom (RSP11304)
  18. 0.244 Cherry Blossom (RSP11321)
  19. 0.246 Cherry Wine (RSP11145)
  20. 0.247 13 Cherries (RSP11442)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.498 GG4 (RSP11978)
  2. 0.470 Lemon OG Haze (RSP11977)
  3. 0.470 RKM-2018-026 (RSP11118)
  4. 0.467 Fatso (RSP11741)
  5. 0.465 GMO x Garlic Breath (RSP12507)
  6. 0.464 Red Eye OG (RSP11190)
  7. 0.464 Abacus (RSP11266)
  8. 0.463 RKM-2018-032 (RSP11124)
  9. 0.462 RKM-2018-017 (RSP11109)
  10. 0.462 RKM-2018-021 (RSP11113)
  11. 0.460 Glueberry OG (RSP11222)
  12. 0.459 Kush Hemp E1 (RSP11128)
  13. 0.459 B52 (SRR14708255)
  14. 0.458 SFVxTK (RSP11072)
  15. 0.456 RKM-2018-013 (RSP11104)
  16. 0.454 Queen Dream CBG (RSP11287)
  17. 0.450 Rugburn OG (RSP11353)
  18. 0.449 Pie Scream (RSP12482)
  19. 0.447 Skywalker OG (RSP10837)
  20. 0.447 Chem 91 (RSP11185)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448752
Overlapping SNPs:
70
Concordance:
43

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495317
Overlapping SNPs:
10
Concordance:
10

Blockchain Registration Information

Transaction ID
e95fdf29ea8f509b4dacfb888428d30e9c350a89b67881c123e02b298cadb20a
Stamping Certificate
Download PDF (871.8 KB)
SHASUM Hash
4eabb307b2b8b74bfbf328699a4c43635fe6188d637d207b14e72a42c1e80767
QR code for RSP11270

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