Advanced Strain Search

Cherry Blossom

RSP 11304

Grower: Yabba Cannaba

General Information

Sample Name
CK9
Accession Date
October 16, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.16%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0523
male female RSP11304

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.126 Cherry Blossom (RSP11320)
  2. 0.144 Cherry Blossom (RSP11332)
  3. 0.149 Unknown--Cherry Wine---005- (RSP11272)
  4. 0.152 Cherry Wine (RSP11145)
  5. 0.163 Cherry Blossom (RSP11322)
  6. 0.165 Cherry Wine (RSP11305)
  7. 0.165 Cherry Wine (RSP11307)
  8. 0.166 Cherry Blossom (RSP11329)
  9. 0.167 Cherry Blossom (RSP11299)
  10. 0.169 Cherry Blossom (RSP11310)
  11. 0.177 Electra (RSP11366)
  12. 0.179 Lift (RSP11378)
  13. 0.180 Cherry Blossom (RSP11327)
  14. 0.180 Cherry Blossom (RSP11326)
  15. 0.186 Otto (RSP11147)
  16. 0.189 13 Cherries (RSP11442)
  17. 0.190 Cherry Blossom (RSP11330)
  18. 0.190 Cherry Blossom (RSP11313)
  19. 0.193 Cherry Blossom (RSP11298)
  20. 0.194 Cherry Blossom (RSP11306)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.461 JL yellow (RSP11075)
  2. 0.447 Northern Lights (RSP11501)
  3. 0.447 JL 4th Gen 2 (RSP11194)
  4. 0.440 JL 3rd Gen Mother (RSP11214)
  5. 0.440 JL 4th Gen 1 (RSP11193)
  6. 0.437 JL 3rd Gen Father (RSP11196)
  7. 0.435 Ruderalis Indica (SRR14708267)
  8. 0.433 Kush Hemp E1 (RSP11128)
  9. 0.431 Big Bud (SRR14708270)
  10. 0.430 JL 4th Gen 5 (RSP11199)
  11. 0.428 R1in136 (SRR14708226)
  12. 0.428 IUP3 (SRR14708256)
  13. 0.425 Danny Noonan (RSP11070)
  14. 0.421 JL 4th Gen 6 (RSP11200)
  15. 0.421 RKM-2018-026 (RSP11118)
  16. 0.421 Tanao Sri-white -80- (RSP11621)
  17. 0.420 IUP2 (SRR14708257)
  18. 0.420 Cbot-2019-005 (RSP11133)
  19. 0.417 R3in134 (SRR14708218)
  20. 0.417 80E (RSP11213)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347252
Overlapping SNPs:
66
Concordance:
44

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
98c425b42b02faefa538d93626c277d4b6d25240bea459a754d32c6b74c5b752
Stamping Certificate
Download PDF (851.9 KB)
SHASUM Hash
e4ecfc2e9fd5fbdcc68d7d25638c6178289ad64ee7b0f80aad2832b5a51aa4b0
QR code for RSP11304

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