Cherry Blossom
RSP 11326
Grower: Yabba Cannaba
General Information
- Sample Name
- CG8
- Accession Date
- October 17, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.
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This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).
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This chart represents the Illumina sequence coverage over the CBCA synthase gene.
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Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-4b | c.556A>G | p.Arg186Gly | missense variant & splice region variant | moderate | contig700 | 2721117 | T/C |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.110C>T | p.Ala37Val | missense variant | moderate | contig83 | 1803259 | G/A |
|
FAD2-2 |
c.47_57delTG |
p.Leu16fs | frameshift variant | high | contig83 | 1803311 |
GAGTATGATTCA |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
Nearest genetic relatives (All Samples)
- 0.141 Cherry Blossom (RSP11302)
- 0.152 Cherry Blossom (RSP11329)
- 0.180 Cherry Blossom (RSP11304)
- 0.187 Cherry Blossom (RSP11313)
- 0.195 Cherry Blossom (RSP11320)
- 0.205 Lift (RSP11378)
- 0.208 QLF3 (RSP11453)
- 0.214 Cherry Blossom (RSP11316)
- 0.214 Cherry Blossom (RSP11299)
- 0.214 Cherry Blossom (RSP11322)
- 0.215 Electra (RSP11366)
- 0.215 Cherry Blossom (RSP11321)
- 0.219 Cherry Blossom (RSP11317)
- 0.220 Cherry Blossom (RSP11315)
- 0.221 Queen Dream CBG (RSP11286)
- 0.237 Unknown--Cherry Wine---005- (RSP11272)
- 0.239 Blueberry Cheesecake (RSP10684)
- 0.240 Cherry Blossom (RSP11308)
- 0.242 Cherry Blossom (RSP11324)
- 0.242 Cherry Blossom (RSP11319)
Most genetically distant strains (All Samples)
- 0.490 Northern Lights (RSP11501)
- 0.470 JL 3rd Gen Mother (RSP11214)
- 0.469 Cbot-2019-005 (RSP11133)
- 0.468 Chem 91 (RSP11185)
- 0.462 JL 3rd Gen Father (RSP11196)
- 0.461 JL yellow (RSP11075)
- 0.451 Fatso (RSP11741)
- 0.451 JL 4th Gen 1 (RSP11193)
- 0.448 JL 4th Gen 2 (RSP11194)
- 0.445 Big Bud (SRR14708270)
- 0.441 Chematonic -Cannatonic x Chemdawg- (RSP11394)
- 0.440 JL 4th Gen 3 (RSP11195)
- 0.439 AVIDEKEL 2 0 (RSP11174)
- 0.439 RKM-2018-002 (RSP11093)
- 0.435 BagSeed (RSP12501)
- 0.434 Skunk#18 (RSP11038)
- 0.433 Juicy Gummy x Royal Kush (RSP12484)
- 0.429 Danny Noonan (RSP11070)
- 0.429 JL 4th Gen 5 (RSP11199)
- 0.428 AVIDEKEL USA (RSP11169)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 66
- Concordance:
- 36
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
dc0c167a8f4f064f
feef48d368c83ffd 58063e4dbe6ec051 df6f7a63f343c353 - Stamping Certificate
- Download PDF (850.7 KB)
- SHASUM Hash
-
fcabcc09325055ce
3d2eec80e5541931 5165a3fe01773dee fd540e55ab65f086