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Blueberry Cheesecake

RSP 10684

Grower: N/A

General Information

Accession Date
February 21, 2017
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.04%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0396
male female RSP10684

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.111 Doug s Varin (RSP11243)
  2. 0.116 Electra (RSP11366)
  3. 0.117 Domnesia (RSP11184)
  4. 0.121 Serious Happiness (RSP10763)
  5. 0.131 Trump x Trump (RSP11466)
  6. 0.136 Lift (RSP11378)
  7. 0.137 Rest (RSP11377)
  8. 0.147 NSPM1 (RSP11362)
  9. 0.149 Cherry Blossom (RSP11320)
  10. 0.157 JL 4th Gen 7 (RSP11153)
  11. 0.164 Joy (RSP11380)
  12. 0.165 Whitey (RSP11363)
  13. 0.167 CBG-#40 (RSP11444)
  14. 0.167 UnObtanium (RSP11611)
  15. 0.168 Thank You Jerry (RSP11459)
  16. 0.170 Durban Poison #1 (RSP10996)
  17. 0.171 SHERBERT (RSP11355)
  18. 0.171 Suver Haze (RSP11364)
  19. 0.172 Badger (RSP11614)
  20. 0.173 JL X NSPM1 14 (RSP11473)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
closely related moderately related distantly related
  1. 0.403 JL 3rd Gen Father (RSP11196)
  2. 0.385 JL yellow (RSP11075)
  3. 0.385 Unknown--Cherry Wine---001- (RSP11268)
  4. 0.383 Northern Lights (RSP11501)
  5. 0.376 80E (RSP11213)
  6. 0.373 Feral (RSP11205)
  7. 0.373 Cherry Blossom (RSP11323)
  8. 0.370 Tanao Sri -46- (RSP11486)
  9. 0.367 IUP2 (SRR14708257)
  10. 0.366 R1in136 (SRR14708226)
  11. 0.366 Feral (RSP11206)
  12. 0.366 Feral (RSP10890)
  13. 0.365 Feral (RSP10892)
  14. 0.361 R1in136 (SRR14708227)
  15. 0.361 Cherry Blossom (RSP11318)
  16. 0.360 JL 4th Gen 5 (RSP11199)
  17. 0.356 IUP3 (SRR14708256)
  18. 0.356 80E (RSP11212)
  19. 0.355 Cherry Blossom (RSP11301)
  20. 0.354 JL 3rd Gen Mother (RSP11214)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346845
Overlapping SNPs:
67
Concordance:
50

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495169
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
1f6518e024aa84ee268ccc7c3ee0e685189a588136942559ece3c824f4354c43
Stamping Certificate
Download PDF (867.6 KB)
SHASUM Hash
ee20d99f28f46958b8a23c0ce21fae5fd893f002547fc939c2d968d654228f35
QR code for RSP10684

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