Cherry Blossom
RSP 11318
Grower: Yabba Cannaba
General Information
- Sample Name
- CC7
- Accession Date
- October 16, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
FAD2-2 | c.62C>T | p.Pro21Leu | missense variant | moderate | contig83 | 1803307 | G/A |
|
FAD2-2 |
c.47_57delTG |
p.Leu16fs | frameshift variant | high | contig83 | 1803311 |
GAGTATGATTCA |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.208 Unknown--Cherry Wine---001- (RSP11268)
- 0.209 Cherry Blossom (RSP11274)
- 0.224 Cherry Blossom (RSP11302)
- 0.231 Cherry Blossom (RSP11321)
- 0.240 Cherry Blossom (RSP11310)
- 0.242 Queen Dream (RSP11291)
- 0.244 Cherry Blossom (RSP11327)
- 0.246 Queen Dream CBG (RSP11283)
- 0.257 Cherry Blossom (RSP11323)
- 0.259 QLE1 (RSP11451)
- 0.263 Wife (RSP11148)
- 0.266 Cold Weather Cherry (RSP11414)
- 0.266 Cherry Blossom (RSP11299)
- 0.269 Cherry Blossom (RSP11319)
- 0.269 Cherry Blossom (RSP11334)
- 0.271 Cherry Blossom (RSP11331)
- 0.271 Cherry Blossom (RSP11308)
- 0.272 Queen Dream CBG (RSP11296)
- 0.276 QLF4 (RSP11441)
- 0.276 Cherry Blossom (RSP11335)
Most genetically distant strains (All Samples)
- 0.526 Garlic (RSP11341)
- 0.522 80E (RSP11213)
- 0.520 Kush Hemp E1 (RSP11128)
- 0.520 80E (RSP11211)
- 0.510 80E (RSP11212)
- 0.505 GMO x Garlic Breath (RSP12507)
- 0.501 Red Eye OG (RSP11190)
- 0.500 BagSeed (RSP12501)
- 0.494 R3in134 (SRR14708220)
- 0.493 Skywalker OG (RSP10837)
- 0.492 R3in134 (SRR14708219)
- 0.492 Star Dawg (RSP11352)
- 0.491 R3in134 (SRR14708218)
- 0.486 RKM-2018-026 (RSP11118)
- 0.483 Fatso (RSP11741)
- 0.483 Cbot-2019-005 (RSP11133)
- 0.483 RKM-2018-013 (RSP11104)
- 0.483 Peanut Butter Breath (RSP11640)
- 0.481 Pie Hoe (RSP11073)
- 0.480 BagSeed (RSP12627)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 64
- Concordance:
- 39
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 7
- Concordance:
- 7
Blockchain Registration Information
- Transaction ID
-
93f24392102a9dd3
1a6058812e616ed2 aaf98a3b3600e4d9 17569f74e0f8688f - Stamping Certificate
- Download PDF (867.5 KB)
- SHASUM Hash
-
0e0921271047885f
cf7d24a1669dc6b8 5fcbcc76f0aadf2c 8830b0bc2653a9e3