RKM-2018-026
RSP 11118
Grower: R-Kiem Seeds
General Information
- Accession Date
- October 21, 2018
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
aPT4 |
c.515+41_519 |
p.Ile173fs | frameshift variant & splice acceptor variant & splice region variant & intron variant | high | contig121 | 2830750 |
CTATAATATTGA |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.150 Skywalker OG (RSP10837)
- 0.153 SFVxTK (RSP11072)
- 0.166 Red Eye OG (RSP11190)
- 0.166 Rugburn OG (RSP11353)
- 0.174 RKM-2018-013 (RSP11104)
- 0.175 East side OG (RSP12089)
- 0.178 Absolute OG (RSP11455)
- 0.186 Deadhead OG (RSP11463)
- 0.201 Motor Breath #15 (RSP12093)
- 0.201 Garlic (RSP11341)
- 0.205 Fatso (RSP11741)
- 0.205 Cherry Lime Runtz (RSP12486)
- 0.206 RKM-2018-012 (RSP11103)
- 0.206 SourD (RSP12092)
- 0.209 Gorilla Cookies (RSP11231)
- 0.213 501st OG (RSP11241)
- 0.215 Pie Hoe (RSP11073)
- 0.220 RKM-2018-034 (RSP11126)
- 0.221 Peanut Butter Breath (RSP11640)
- 0.222 The Gift (RSP10988)
Most genetically distant strains (All Samples)
- 0.486 Cherry Blossom (RSP11318)
- 0.484 Cherry Blossom (RSP11323)
- 0.480 Cherry Blossom (RSP11312)
- 0.470 Unknown--Cherry Wine---003- (RSP11270)
- 0.469 Wife (RSP11148)
- 0.469 Cherry Blossom (RSP11298)
- 0.467 Tanao Sri -46- (RSP11486)
- 0.462 Avidekel 05MAY2017 (RSP10938)
- 0.461 Cherry Blossom (RSP11274)
- 0.458 Unknown--Cherry Wine---002- (RSP11269)
- 0.450 Chematonic -Cannatonic x Chemdawg- (RSP11394)
- 0.449 Ringo s Gift -Katie s Cut- (RSP11624)
- 0.448 Unknown--Cherry Wine---001- (RSP11268)
- 0.444 Cherry Blossom (RSP11328)
- 0.444 Cherry Blossom (RSP11300)
- 0.442 Cherry Blossom (RSP11309)
- 0.441 Cherry Blossom (RSP11330)
- 0.440 Otto (RSP11147)
- 0.439 Cherry Blossom (RSP11302)
- 0.439 Cherry Blossom (RSP11322)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 79
- Concordance:
- 60
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4
Blockchain Registration Information
- Transaction ID
-
260e497261b87418
e63b1823c470a65b 918e192f7bd79d95 3a91e78d3e868a18 - Stamping Certificate
- Download PDF (861.7 KB)
- SHASUM Hash
-
c3e901c609b3abec
48cb191b3e6f74b7 a46b49015724dae6 b5bf5453575b223f