Advanced Strain Search

RKM-2018-012

RSP 11103

Grower: R-Kiem Seeds

General Information

Accession Date
September 6, 2018
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.79%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0399
male female RSP11103

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.120 Rugburn OG (RSP11353)
  2. 0.133 501st OG (RSP11241)
  3. 0.138 SFVxTK (RSP11072)
  4. 0.139 Skywalker OG (RSP10837)
  5. 0.142 Red Eye OG (RSP11190)
  6. 0.148 Absolute OG (RSP11455)
  7. 0.151 East side OG (RSP12089)
  8. 0.155 Fatso (RSP11741)
  9. 0.158 RKM-2018-002 (RSP11093)
  10. 0.160 RKM-2018-013 (RSP11104)
  11. 0.164 CHEM4 (RSP12090)
  12. 0.164 Motor Breath #15 (RSP12093)
  13. 0.165 Deadhead OG (RSP11463)
  14. 0.177 Chem 91 (RSP11185)
  15. 0.179 GMO (RSP12091)
  16. 0.194 Abacus (RSP11266)
  17. 0.195 Black Triangle (RSP11638)
  18. 0.195 Bueller F3 (RSP12503)
  19. 0.198 Star Dawg (RSP11352)
  20. 0.199 Pure Power Plant (RSP11265)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.494 Northern Skunk (RSP11456)
  2. 0.482 Tanao Sri -46- (RSP11486)
  3. 0.479 JL 4th Gen 5 (RSP11199)
  4. 0.471 JL yellow (RSP11075)
  5. 0.468 JL 4th Gen 4 (RSP11198)
  6. 0.466 JL 4th Gen 2 (RSP11194)
  7. 0.464 Brunswick High (RSP11164)
  8. 0.461 Unknown--Cherry Wine---001- (RSP11268)
  9. 0.458 JL 3rd Gen Mother (RSP11214)
  10. 0.457 Cherry Blossom (RSP11318)
  11. 0.455 Cherry Blossom (RSP11323)
  12. 0.453 JL X NSPM1 12 (RSP11472)
  13. 0.450 JL 4th Gen 1 (RSP11193)
  14. 0.449 JL 3rd Gen Father (RSP11196)
  15. 0.449 JL 4th Gen 6 (RSP11200)
  16. 0.447 Swaziland (SRR14708271)
  17. 0.445 Cherry Blossom (RSP11301)
  18. 0.444 Hindu Kush (SRR14708261)
  19. 0.444 JL X NSPM1 8 (RSP11470)
  20. 0.443 Gorilla Glue (RSP11493)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349263
Overlapping SNPs:
124
Concordance:
98

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
af3b1e6a05abc85c9738f2a977e840d7f0b37afc24e126d3d1457fbc30444d63
Stamping Certificate
Download PDF (849.5 KB)
SHASUM Hash
0610216f437bb3f96512a5e6f0a5569265ecf275c3a685c4bfd788dc0ecccb20
QR code for RSP11103

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