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Pure Power Plant

RSP 11265

Grower: Kyle Russell

General Information

Sample Name
Power Plant
Accession Date
September 16, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.15%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0427
male female RSP11265

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.973C>A p.Leu325Met missense variant moderate contig700 1950665

IGV: Start, Jump

G/T
NGS:
0.002
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.135 Rugburn OG (RSP11353)
  2. 0.135 RKM-2018-008 (RSP11099)
  3. 0.153 Gorilla Cookies (RSP11231)
  4. 0.156 SFVxTK (RSP11072)
  5. 0.157 RKM-2018-021 (RSP11113)
  6. 0.157 RKM-2018-017 (RSP11109)
  7. 0.158 RKM-2018-032 (RSP11124)
  8. 0.161 RKM-2018-013 (RSP11104)
  9. 0.161 The Gift (RSP10988)
  10. 0.162 Absolute OG (RSP11455)
  11. 0.163 Skywalker OG (RSP10837)
  12. 0.163 501st OG (RSP11241)
  13. 0.166 RKM-2018-034 (RSP11126)
  14. 0.167 ILM (RSP12623)
  15. 0.171 Red Eye OG (RSP11190)
  16. 0.171 Deadhead OG (RSP11463)
  17. 0.173 Triangle Kush x Square Wave BX (RSP12100)
  18. 0.173 SourD (RSP12092)
  19. 0.178 East Coast Sour Diesel (RSP10243)
  20. 0.178 GG4 (RSP12096)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.491 Cherry Blossom (RSP11300)
  2. 0.459 Cherry Blossom (RSP11301)
  3. 0.458 Cherry Blossom (RSP11328)
  4. 0.438 Unknown--Cherry Wine---001- (RSP11268)
  5. 0.438 Cherry Blossom (RSP11318)
  6. 0.435 Cherry Blossom (RSP11309)
  7. 0.430 Tanao Sri -46- (RSP11486)
  8. 0.426 Unknown--Cherry Wine---003- (RSP11270)
  9. 0.424 Cherry Blossom (RSP11312)
  10. 0.420 Cherry Blossom (RSP11325)
  11. 0.419 JL yellow (RSP11075)
  12. 0.419 Unknown--Cherry Wine---002- (RSP11269)
  13. 0.417 Cherry Blossom (RSP11323)
  14. 0.417 Wife (RSP11148)
  15. 0.411 Northern Skunk (RSP11456)
  16. 0.411 JL 3rd Gen Father (RSP11196)
  17. 0.411 JL 4th Gen 5 (RSP11199)
  18. 0.410 Cherry (RSP11142)
  19. 0.408 Cherry Blossom (RSP11311)
  20. 0.406 Cherry Blossom (RSP11313)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347010
Overlapping SNPs:
69
Concordance:
66

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495277
Overlapping SNPs:
11
Concordance:
11

Blockchain Registration Information

Transaction ID
7608e11f6a655989dfaf70c4b0eaf419b5b34454ce042237d2812e250f39dba4
Stamping Certificate
Download PDF (847.2 KB)
SHASUM Hash
40496e52b6d766129bda6b627841fcafeba63855f467173f6869930168f3da74
QR code for RSP11265

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