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RSP 11072

Grower: Jungle Boys (Kyle)

General Information

Accession Date
May 14, 2018
Reported Plant Sex
not reported
DNA Extracted From
Flower

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.91%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0457
male female RSP11072

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.002 Skywalker OG (RSP10837)
  2. 0.006 Red Eye OG (RSP11190)
  3. 0.007 Absolute OG (RSP11455)
  4. 0.019 East side OG (RSP12089)
  5. 0.063 RKM-2018-013 (RSP11104)
  6. 0.082 Rugburn OG (RSP11353)
  7. 0.117 501st OG (RSP11241)
  8. 0.136 RKM-2018-034 (RSP11126)
  9. 0.138 RKM-2018-012 (RSP11103)
  10. 0.145 SourD (RSP12092)
  11. 0.146 Deadhead OG (RSP11463)
  12. 0.153 RKM-2018-026 (RSP11118)
  13. 0.154 Pie Hoe (RSP11073)
  14. 0.156 Pure Power Plant (RSP11265)
  15. 0.166 Casco Kush (RSP11167)
  16. 0.172 Motor Breath #15 (RSP12093)
  17. 0.180 Bueller F3 (RSP12503)
  18. 0.182 RKM-2018-008 (RSP11099)
  19. 0.184 Garlic (RSP11341)
  20. 0.184 Black Triangle (RSP11638)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.477 Cherry Blossom (RSP11318)
  2. 0.464 Northern Skunk (RSP11456)
  3. 0.460 Wife (RSP11148)
  4. 0.459 Unknown--Cherry Wine---001- (RSP11268)
  5. 0.458 Unknown--Cherry Wine---003- (RSP11270)
  6. 0.455 Unknown--Cherry Wine---002- (RSP11269)
  7. 0.455 Cherry Blossom (RSP11323)
  8. 0.451 Tanao Sri -46- (RSP11486)
  9. 0.450 Cherry Blossom (RSP11312)
  10. 0.440 Cherry Blossom (RSP11328)
  11. 0.440 Cherry Blossom (RSP11309)
  12. 0.439 Cherry Blossom (RSP11301)
  13. 0.436 Cherry Blossom (RSP11300)
  14. 0.436 Cherry Blossom (RSP11298)
  15. 0.433 Brunswick High (RSP11164)
  16. 0.433 JL 3rd Gen Mother (RSP11214)
  17. 0.431 JL yellow (RSP11075)
  18. 0.426 Avidekel 05MAY2017 (RSP10938)
  19. 0.424 Cherry Blossom (RSP11319)
  20. 0.421 JL X NSPM1 12 (RSP11472)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347029
Overlapping SNPs:
120
Concordance:
120

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495293
Overlapping SNPs:
14
Concordance:
14

Blockchain Registration Information

Transaction ID
0d58f3ff72d7e4c41631d2d052909a30468006a7c96b0c0c639517f7a8976795
Stamping Certificate
Download PDF (849.9 KB)
SHASUM Hash
f8a7bf4ace12ddc341563a3b7002af1559385a7c2421dca5a0486d71197b801d
QR code for RSP11072

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