Advanced Strain Search

Casco Kush

RSP 11167

Grower: Elevation Science

General Information

Sample Name
CK-19
Accession Date
June 18, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.74%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0407
male female RSP11167

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.166 SFVxTK (RSP11072)
  2. 0.166 Skywalker OG (RSP10837)
  3. 0.168 East side OG (RSP12089)
  4. 0.169 Absolute OG (RSP11455)
  5. 0.175 RKM-2018-013 (RSP11104)
  6. 0.177 Red Eye OG (RSP11190)
  7. 0.183 Tahoe OG (RSP11189)
  8. 0.186 RKM-2018-034 (RSP11126)
  9. 0.191 Gorilla Cookies (RSP11231)
  10. 0.193 SHERBERT (RSP11355)
  11. 0.195 Serious Happiness (RSP10763)
  12. 0.197 Rugburn OG (RSP11353)
  13. 0.201 Domnesia (RSP11184)
  14. 0.203 NSPM x NSPM (RSP11487)
  15. 0.205 JL X NSPM1 14 (RSP11473)
  16. 0.207 North Traveler (RSP11163)
  17. 0.208 Black Triangle (RSP11638)
  18. 0.213 Pure Power Plant (RSP11265)
  19. 0.218 Jilly bean (RSP11230)
  20. 0.218 Bueller F3 (RSP12503)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.463 Cherry Blossom (RSP11323)
  2. 0.442 Cherry Blossom (RSP11328)
  3. 0.437 Unknown--Cherry Wine---001- (RSP11268)
  4. 0.434 Cherry Blossom (RSP11301)
  5. 0.434 Cherry Blossom (RSP11318)
  6. 0.417 Unknown--Cherry Wine---003- (RSP11270)
  7. 0.416 Cherry Blossom (RSP11298)
  8. 0.414 Tanao Sri -46- (RSP11486)
  9. 0.413 Unknown--Cherry Wine---002- (RSP11269)
  10. 0.413 Cherry Blossom (RSP11309)
  11. 0.411 Northern Skunk (RSP11456)
  12. 0.408 AVIDEKEL 2 0 (RSP11174)
  13. 0.405 JL yellow (RSP11075)
  14. 0.405 Cherry Blossom (RSP11300)
  15. 0.405 Cherry Blossom (RSP11306)
  16. 0.403 80E (RSP11213)
  17. 0.401 JL 3rd Gen Mother (RSP11214)
  18. 0.398 Wife (RSP11148)
  19. 0.394 JL 3rd Gen Mother (RSP11197)
  20. 0.393 Cherry Blossom (RSP11325)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346850
Overlapping SNPs:
92
Concordance:
67

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495285
Overlapping SNPs:
13
Concordance:
12

Blockchain Registration Information

Transaction ID
1347aaf0c42a99388899a930de5529d5f67cb8b3729263fa3829bb649583d5e8
Stamping Certificate
Download PDF (874.3 KB)
SHASUM Hash
5caaac57921734a9340380b46ba9fe7c4a3f9503c6fc5d79fe6783ed1c7f732c
QR code for RSP11167

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