Advanced Strain Search

SHERBERT

RSP 11355

Grower: Happy Valley

Summary

SHERBERT (RSP11355/Happy Valley) is a genetic Type I plant and its genetics appear uncommon. The sample's closest relative in the database is Domnesia (RSP11184/NETA) and it is a potential sibling. The heterozygosity rate is 1.08% which is average (46.6 percentile).

General Information

Accession Date
October 22, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.08%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0465
male female RSP11355

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.617A>G p.Tyr206Cys missense variant moderate contig700 1938028

IGV: Start, Jump

A/G
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.626_628delATA p.Asn209del disruptive inframe deletion moderate contig700 1938032

IGV: Start, Jump

CAAT/C
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.1136G>A p.Arg379His missense variant moderate contig700 1944254

IGV: Start, Jump

C/T
NGS:
0.020
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1944456

IGV: Start, Jump

G/C
NGS:
0.070
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.67A>T p.Ile23Phe missense variant moderate contig700 1951815

IGV: Start, Jump

T/A
NGS:
0.033
C90:
0.325
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.155 Domnesia (RSP11184)
  2. 0.171 Blueberry Cheesecake (RSP10684)
  3. 0.171 JL X NSPM1 14 (RSP11473)
  4. 0.178 JL X NSPM1 7 (RSP11469)
  5. 0.180 NSPM1 (RSP11362)
  6. 0.181 Serious Happiness (RSP10763)
  7. 0.185 Skywalker OG (RSP10837)
  8. 0.186 Electra (RSP11366)
  9. 0.186 Mother s Milk No 31 (RSP11623)
  10. 0.187 SFVxTK (RSP11072)
  11. 0.188 Super Blue Dream (RSP11011)
  12. 0.188 Whitey (RSP11363)
  13. 0.190 RKM-2018-034 (RSP11126)
  14. 0.191 JL Cross 21 (RSP11522)
  15. 0.191 JL Cross 10 (RSP11511)
  16. 0.191 Blue Dream (RSP11006)
  17. 0.193 Casco Kush (RSP11167)
  18. 0.193 NSPM x NSPM (RSP11487)
  19. 0.196 Blue Dream (RSP11017)
  20. 0.199 JL Cross 28 (RSP11529)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.456 Unknown--Cherry Wine---001- (RSP11268)
  2. 0.455 Cherry Blossom (RSP11328)
  3. 0.454 Cherry Blossom (RSP11323)
  4. 0.436 Cherry Blossom (RSP11311)
  5. 0.429 Unknown--Cherry Wine---003- (RSP11270)
  6. 0.413 Cherry Blossom (RSP11309)
  7. 0.413 Cherry Blossom (RSP11334)
  8. 0.408 Cbot-2019-005 (RSP11133)
  9. 0.406 Unknown--Cherry Wine---002- (RSP11269)
  10. 0.406 Cherry Blossom (RSP11298)
  11. 0.404 Cherry Blossom (RSP11301)
  12. 0.399 Cherry Blossom (RSP11318)
  13. 0.394 Tanao Sri -46- (RSP11486)
  14. 0.393 Cherry Blossom (RSP11314)
  15. 0.392 Tiger Tail -30- (RSP11484)
  16. 0.390 80E (RSP11213)
  17. 0.387 R1 (RSP11483)
  18. 0.386 Northern Lights (RSP11501)
  19. 0.386 Feral (RSP10890)
  20. 0.384 IUP2 (SRR14708257)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448266
Overlapping SNPs:
66
Concordance:
65

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495315
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
ead7bb03b7f20919e467f8f8c6350c8301b6b5ee74a4d126bb8ebae0b4ab94d9
Stamping Certificate
Download PDF (851.3 KB)
SHASUM Hash
f0a33b7874491db5456858e26db347c544f3d757a0c2bf9d7f79bb550763f14d
QR code for RSP11355

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