Otto

RSP 11147

Grower: PhytaTech

General Information

Accession Date
May 7, 2019
Reported Plant Sex
not reported
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.83%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.1006
male female RSP11147

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.162 Cherry Wine (RSP11145)
  2. 0.178 Electra (RSP11366)
  3. 0.186 Cherry Blossom (RSP11304)
  4. 0.190 Lift (RSP11378)
  5. 0.196 FL30 7 11 2019 (RSP11361)
  6. 0.207 Wife (RSP11148)
  7. 0.210 Lifter (RSP11365)
  8. 0.212 Queen Dream CBG (RSP11285)
  9. 0.214 Ringo s Angel (RSP10085)
  10. 0.215 Cherry Wine (RSP11307)
  11. 0.215 Queen Dream CBG (RSP11297)
  12. 0.216 Unknown--Cherry Wine---005- (RSP11272)
  13. 0.217 Cherry Wine (RSP11305)
  14. 0.223 Cherry (RSP11143)
  15. 0.225 Midnight 05MAY2017 (RSP10941)
  16. 0.226 Domnesia (RSP11184)
  17. 0.227 Suver Haze (RSP11364)
  18. 0.227 Doug s Varin (RSP11243)
  19. 0.228 Cbot-2019-001 (RSP11129)
  20. 0.230 Cherry Blossom (RSP11327)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.440 Fatso (RSP11741)
  2. 0.440 RKM-2018-026 (RSP11118)
  3. 0.423 Red Eye OG (RSP11190)
  4. 0.420 Abacus (RSP11266)
  5. 0.420 RKM-2018-012 (RSP11103)
  6. 0.419 GMO x Garlic Breath (RSP12507)
  7. 0.417 CHEM4 (RSP12090)
  8. 0.415 BagSeed (RSP12501)
  9. 0.414 JL yellow (RSP11075)
  10. 0.413 Kush Hemp E1 (RSP11128)
  11. 0.412 JL 3rd Gen Father (RSP11196)
  12. 0.412 RKM-2018-002 (RSP11093)
  13. 0.411 Skywalker OG (RSP10837)
  14. 0.408 Chem 91 (RSP11185)
  15. 0.406 Big Bud (SRR14708270)
  16. 0.406 Northern Skunk (RSP11456)
  17. 0.405 White Label 1 (RSP11336)
  18. 0.403 SFVxTK (RSP11072)
  19. 0.402 Right Mark (RSP11628)
  20. 0.400 JL 3rd Gen Mother (RSP11197)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347252
Overlapping SNPs:
124
Concordance:
88

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495180
Overlapping SNPs:
8
Concordance:
7

Blockchain Registration Information

Transaction ID
aa1b78e106982d16c339a9f1d5730549b1f5cbcb0484ca20abce14f7c65bed87
Stamping Certificate
Download PDF (856.0 KB)
SHASUM Hash
4f43818510027f2b4f6dc518406ffeacffaf93c10a636368b4dd68069c59fa0e
QR code for RSP11147

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