Advanced Strain Search

Cherry Wine

RSP 11145

Grower: PhytaTech

General Information

Accession Date
May 7, 2019
Reported Plant Sex
not reported
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.49%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0388
male female RSP11145

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.492G>C p.Glu164Asp missense variant moderate contig700 2721181

IGV: Start, Jump

C/G
NGS:
0.048
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.152 Cherry Blossom (RSP11304)
  2. 0.162 Otto (RSP11147)
  3. 0.193 Cherry Blossom (RSP11330)
  4. 0.196 Cherry Wine (RSP11307)
  5. 0.196 Cherry Wine (RSP11305)
  6. 0.200 Midnight 05MAY2017 (RSP10941)
  7. 0.204 Cherry Blossom (RSP11298)
  8. 0.208 Electra (RSP11366)
  9. 0.209 RAPHAEL #2 (RSP11172)
  10. 0.209 Cherry Blossom (RSP11332)
  11. 0.212 Unknown--Cherry Wine---005- (RSP11272)
  12. 0.213 13 Cherries (RSP11442)
  13. 0.214 Cherry Blossom (RSP11310)
  14. 0.216 Cherry (RSP11143)
  15. 0.217 Cherry Blossom (RSP11320)
  16. 0.217 2nd Gen Cherry (RSP11141)
  17. 0.218 Domnesia (RSP11184)
  18. 0.219 Blueberry Cheesecake (RSP10684)
  19. 0.221 Cherry Blossom (RSP11299)
  20. 0.225 Joy (RSP11380)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.434 RKM-2018-026 (RSP11118)
  2. 0.433 Fatso (RSP11741)
  3. 0.427 Chem 91 (RSP11185)
  4. 0.421 Kush Hemp E1 (RSP11128)
  5. 0.420 Abacus (RSP11266)
  6. 0.418 Black Triangle (RSP11638)
  7. 0.418 Red Eye OG (RSP11190)
  8. 0.418 RKM-2018-012 (RSP11103)
  9. 0.413 GG4 (RSP11978)
  10. 0.411 CHEM4 (RSP12090)
  11. 0.404 80E (RSP11213)
  12. 0.403 GMO x Garlic Breath (RSP12507)
  13. 0.403 Northern Skunk (RSP11456)
  14. 0.403 Right Mark (RSP11628)
  15. 0.403 JL 3rd Gen Father (RSP11196)
  16. 0.403 Motor Breath #15 (RSP12093)
  17. 0.402 Cherry Blossom (RSP11318)
  18. 0.402 Danny Noonan (RSP11070)
  19. 0.400 80E (RSP11212)
  20. 0.400 RKM-2018-002 (RSP11093)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347252
Overlapping SNPs:
124
Concordance:
112

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495222
Overlapping SNPs:
14
Concordance:
12

Blockchain Registration Information

Transaction ID
b583e85a0cf301eb54be40322ff1e27e62948a64097bc4b807fda315137b25b3
Stamping Certificate
Download PDF (853.4 KB)
SHASUM Hash
2ad4126892be08d2099ae08696e4618376b964ccb0bde01b89a00e53cde1d463
QR code for RSP11145

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