Advanced Strain Search

2nd Gen Cherry

RSP 11141

Grower: CO/GHA, LLC

General Information

Sample Name
VR Comparison
Accession Date
April 9, 2019
Reported Plant Sex
not reported
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.97%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.1000
male female RSP11141

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.204 13 Cherries (RSP11442)
  2. 0.218 Durban Poison #1 (RSP11013)
  3. 0.218 Cherry Blossom (RSP11304)
  4. 0.218 Cherry Wine (RSP11145)
  5. 0.222 Cold Weather Stout (RSP11418)
  6. 0.234 Ringo s Gift -Katie s Cut- (RSP11624)
  7. 0.237 Cherry Blossom (RSP11332)
  8. 0.238 Cherry Blossom (RSP11321)
  9. 0.238 Cherry (RSP11143)
  10. 0.240 Otto (RSP11147)
  11. 0.245 Durban Poison #1 (RSP10996)
  12. 0.246 Electra (RSP11366)
  13. 0.246 UP Sunrise (RSP10989)
  14. 0.246 Joy (RSP11380)
  15. 0.248 Cold Weather Cherry (RSP11414)
  16. 0.248 FL30 7 11 2019 (RSP11361)
  17. 0.249 Sweet Grass (RSP11146)
  18. 0.251 Durban Poison (RSP11014)
  19. 0.252 Domnesia (RSP11184)
  20. 0.255 Blueberry Cheesecake (RSP10684)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.441 Fatso (RSP11741)
  2. 0.439 Cherry Blossom (RSP11323)
  3. 0.436 RKM-2018-012 (RSP11103)
  4. 0.432 Chem 91 (RSP11185)
  5. 0.429 80E (RSP11212)
  6. 0.427 80E (RSP11213)
  7. 0.421 Black Triangle (RSP11638)
  8. 0.420 JL yellow (RSP11075)
  9. 0.420 RKM-2018-026 (RSP11118)
  10. 0.420 Abacus (RSP11266)
  11. 0.419 GMO (RSP12091)
  12. 0.419 Feral (RSP11205)
  13. 0.418 Red Eye OG (RSP11190)
  14. 0.418 Cherry Blossom (RSP11314)
  15. 0.416 Right Mark (RSP11628)
  16. 0.413 Dog Patch (RSP11725)
  17. 0.413 IUP2 (SRR14708257)
  18. 0.412 Santhica 27 (SRR14708211)
  19. 0.411 501st OG (RSP11241)
  20. 0.411 JL 3rd Gen Mother (RSP11214)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349223
Overlapping SNPs:
84
Concordance:
58

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495192
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
64a8468126f514a3341341f4ea8e9ff647cebeec0b1a33708c474473158bc767
Stamping Certificate
Download PDF (839.8 KB)
SHASUM Hash
4188e69d1c8c3715601c50c73983d1d1338608c4b2d4e3ca7eb2fafb7807ad0d
QR code for RSP11141

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