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Sweet Grass

RSP 11146

Grower: PhytaTech

General Information

Accession Date
May 7, 2019
Reported Plant Sex
not reported
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.64%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0409
male female RSP11146

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.198 Rest (RSP11377)
  2. 0.208 Electra (RSP11366)
  3. 0.208 Queen Dream CBG (RSP11280)
  4. 0.209 Doug s Varin (RSP11243)
  5. 0.217 Serious Happiness (RSP10763)
  6. 0.217 Blue Dream (RSP11017)
  7. 0.223 Blueberry Cheesecake (RSP10684)
  8. 0.225 Domnesia (RSP11184)
  9. 0.225 Trump x Trump (RSP11466)
  10. 0.227 Blueberry x Tangie (RSP11500)
  11. 0.227 JL 4th Gen 7 (RSP11153)
  12. 0.229 Durban Poison #1 (RSP11013)
  13. 0.232 Lift (RSP11378)
  14. 0.232 Queen Dream CBG (RSP11277)
  15. 0.233 Blue Dream (RSP11010)
  16. 0.233 Ringo s Angel (RSP10085)
  17. 0.234 Suver Haze (RSP11364)
  18. 0.237 Super Blue Dream (RSP11011)
  19. 0.237 Cherry Blossom (RSP11315)
  20. 0.237 Badger (RSP11614)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
closely related moderately related distantly related
  1. 0.427 Cherry Blossom (RSP11328)
  2. 0.418 Fatso (RSP11741)
  3. 0.412 BagSeed (RSP12627)
  4. 0.403 Cherry Blossom (RSP11311)
  5. 0.401 Chem 91 (RSP11185)
  6. 0.399 Right Mark (RSP11628)
  7. 0.396 BagSeed (RSP12501)
  8. 0.396 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  9. 0.393 RKM-2018-012 (RSP11103)
  10. 0.391 CHEM4 (RSP12090)
  11. 0.387 GMO x Garlic Breath (RSP12507)
  12. 0.386 Red Eye OG (RSP11190)
  13. 0.385 Cherry Lime Runtz (RSP12486)
  14. 0.384 Northern Lights (RSP11501)
  15. 0.383 White Label 1 (RSP11336)
  16. 0.383 Cherry Blossom (RSP11298)
  17. 0.381 RKM-2018-026 (RSP11118)
  18. 0.380 GMO x [REDACTED] #43 (RSP11976)
  19. 0.380 GMO (RSP12091)
  20. 0.380 80E (RSP11213)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349138
Overlapping SNPs:
121
Concordance:
77

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
bef1f76d17eaa44e30c8cad8b80ee9ceddd37793708d05a3fdb82b9510bd64d8
Stamping Certificate
Download PDF (853.8 KB)
SHASUM Hash
5d3572a247bf2ae44dd945eecffad59b079b9ced2688fa79782dff714d75d996
QR code for RSP11146

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