Cold Weather Stout
RSP 11418
Grower: Hope Springs Memorial Farm LLC
General Information
- Sample Name
- colorado stout x A. Cherry #5 34:1
- Accession Date
- January 6, 2020
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.8G>A | p.Cys3Tyr | missense variant | moderate | contig1772 | 2082234 | G/A |
|
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C |
Variants (Select Genes of Interest)
PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2a | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1945149 | C/T |
|
PKSG-2a | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1945150 | A/C |
|
PKSG-2a | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1945160 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1951397 | C/T |
|
PKSG-2b | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1951398 | A/C |
|
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
PKSG-2b | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1951414 | T/C | |
PKSG-2b | c.188T>G | p.Ile63Ser | missense variant | moderate | contig700 | 1951450 | A/C |
|
PKSG-2b | c.187A>T | p.Ile63Phe | missense variant | moderate | contig700 | 1951451 | T/A |
|
PKSG-2b | c.167C>G | p.Thr56Ser | missense variant | moderate | contig700 | 1951471 | G/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.492G>C | p.Glu164Asp | missense variant | moderate | contig700 | 2721181 | C/G |
|
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
aPT4 | c.80A>G | p.Lys27Arg | missense variant | moderate | contig121 | 2828736 | A/G |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
HDS-1 | c.2141G>C | p.Gly714Ala | missense variant | moderate | contig1891 | 884225 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.189 Cold Weather Cherry (RSP11414)
- 0.199 Electra (RSP11366)
- 0.210 Blueberry Cheesecake (RSP10684)
- 0.211 Trump x Trump (RSP11466)
- 0.215 Golden Goat 2 (RSP10991)
- 0.215 Joy (RSP11380)
- 0.217 Badger (RSP11614)
- 0.221 2nd Gen Cherry (RSP11141)
- 0.222 Domnesia (RSP11184)
- 0.223 Suver Haze (RSP11364)
- 0.224 Cherry Blossom (RSP11302)
- 0.225 Lift (RSP11378)
- 0.229 Queen Dream (RSP11278)
- 0.233 Doug s Varin (RSP11243)
- 0.237 SO6 (RSP11452)
- 0.237 13 Cherries (RSP11442)
- 0.238 Liberty Haze (RSP11000)
- 0.238 Blueberry x Tangie (RSP11500)
- 0.239 CANNATONIC (RSP11349)
- 0.242 Jolly Rancher (RSP11639)
Most genetically distant strains (All Samples)
- 0.443 JL yellow (RSP11075)
- 0.441 JL 3rd Gen Mother (RSP11214)
- 0.439 XBL1 (SRR14708207)
- 0.429 BagSeed (RSP12501)
- 0.428 R3in134 (SRR14708220)
- 0.427 Northern Lights (RSP11501)
- 0.427 BagSeed (RSP12627)
- 0.426 Chem 91 (RSP11185)
- 0.424 80E (RSP11213)
- 0.422 Red Eye OG (RSP11190)
- 0.422 R1in136 (SRR14708226)
- 0.421 Feral (RSP10892)
- 0.418 Feral (RSP10890)
- 0.418 Feral (RSP11206)
- 0.418 IUP3 (SRR14708256)
- 0.417 White Label 1 (RSP11336)
- 0.416 R3in134 (SRR14708218)
- 0.416 Santhica 27 (SRR14708211)
- 0.415 R1in136 (SRR14708227)
- 0.414 R1in136 (SRR14708237)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 6
- Concordance:
- 4
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 12
- Concordance:
- 11
Blockchain Registration Information
- Transaction ID
-
5dd2f85ac6b59c4f
06bb2585fa9f8605 2e94b371853acb16 f8370582ed0e6052 - Stamping Certificate
- Download PDF (39.6 KB)
- SHASUM Hash
-
d0902c0025c61620
6f8936083e1cb49f 0693d2aca433595d ad5dd9ccc5de1e71