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Golden Goat 2

RSP 10991

Grower: DigiPath Labs

General Information

Sample Name
F20160610-03-9
Accession Date
August 27, 2017
Reported Plant Sex
Female
DNA Extracted From
Unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
25.7%
CBD + CBDA
0.064%
THCV + THCVA
0.002%
CBC + CBCA
0.006%
CBG + CBGA
0.544%
CBN + CBNA
0.096%

Terpenoids

α-Bisabolol
0.028%
Borneol
n/a
Camphene
0.007%
Carene
0.039%
Caryophyllene oxide
0.006%
β-Caryophyllene
0.225%
Fenchol
n/a
Geraniol
0.001%
α-Humulene
0.103%
Limonene
0.158%
Linalool
0.045%
Myrcene
0.22%
α-Phellandrene
n/a
Terpinolene
0.505%
α-Terpineol
n/a
α-Terpinene
0.027%
γ-Terpinene
0.583%
Total Nerolidol
0.019%
Total Ocimene
0.217%
α-Pinene
0.12%
β-Pinene
0.12%

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.96%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0409
male female RSP10991

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.139 Blue Dream (RSP11006)
  2. 0.156 Super Blue Dream (RSP11011)
  3. 0.161 Blue Dream (RSP11017)
  4. 0.162 Blue Dream (RSP11009)
  5. 0.167 Blue Dream (RSP11007)
  6. 0.167 Blue Dream (RSP11004)
  7. 0.170 Blue Dream (RSP11008)
  8. 0.170 Blue Dream (RSP11010)
  9. 0.171 Domnesia (RSP11184)
  10. 0.179 Snoops Dream (RSP11003)
  11. 0.182 Blue Dream (RSP11012)
  12. 0.184 Snoops Dream (RSP11031)
  13. 0.188 UnObtanium (RSP11611)
  14. 0.188 UP Wendigo (RSP11261)
  15. 0.190 Blue Dream (RSP11005)
  16. 0.191 Serious Happiness (RSP10763)
  17. 0.191 Blue Dream (RSP11032)
  18. 0.191 Trump x Trump (RSP11466)
  19. 0.192 Blue Dream (RSP11033)
  20. 0.194 Blue Dream (RSP11342)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.449 Cherry Blossom (RSP11311)
  2. 0.440 Cherry Blossom (RSP11328)
  3. 0.434 Cherry Blossom (RSP11323)
  4. 0.431 Unknown--Cherry Wine---003- (RSP11270)
  5. 0.421 Unknown--Cherry Wine---001- (RSP11268)
  6. 0.417 80E (RSP11213)
  7. 0.415 Cherry Blossom (RSP11317)
  8. 0.415 Cherry Blossom (RSP11314)
  9. 0.414 Feral (RSP11205)
  10. 0.408 Chem 91 (RSP11185)
  11. 0.403 Cherry Blossom (RSP11309)
  12. 0.401 Cherry Blossom (RSP11274)
  13. 0.401 Unknown--Cherry Wine---002- (RSP11269)
  14. 0.401 BagSeed (RSP12627)
  15. 0.400 Tanao Sri -46- (RSP11486)
  16. 0.396 80E (RSP11212)
  17. 0.394 Cherry Blossom (RSP11306)
  18. 0.394 Cherry Blossom (RSP11318)
  19. 0.391 Cherry Blossom (RSP11334)
  20. 0.391 Feral (RSP10890)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448183
Overlapping SNPs:
78
Concordance:
75

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495217
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
fc01b0724f1cf53add58c49494dbcb7d901e28f2c945706d52714e87d82b73c9
Stamping Certificate
Download PDF (836.5 KB)
SHASUM Hash
b21a1f370d90ff4a0423cffedaa12b6e4091f0a46a1e0674b25823fff7197f1f
QR code for RSP10991

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