Advanced Strain Search

Blue Dream

RSP 11033

Grower: Garden Path

General Information

Sample Name
Blue Dream Len Garden Path
Accession Date
November 19, 2017
Reported Plant Sex
Female
DNA Extracted From
Flower

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.72%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0377
male female RSP11033

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.001 Blue Dream (RSP11227)
  2. 0.002 Blue Dream (RSP11008)
  3. 0.002 Blue Dream (RSP11342)
  4. 0.002 Blue Dream (RSP11007)
  5. 0.002 Blue Dream (RSP11005)
  6. 0.002 Blue Dream (RSP11032)
  7. 0.003 Blue Dream (RSP11012)
  8. 0.003 Snoops Dream (RSP11003)
  9. 0.004 Snoops Dream (RSP11031)
  10. 0.006 Blue Dream (RSP11017)
  11. 0.007 Blue Dream (RSP11009)
  12. 0.007 Blue Dream (RSP11010)
  13. 0.008 Blue Dream (RSP11004)
  14. 0.011 Super Blue Dream (RSP11011)
  15. 0.013 Blue Dream (RSP11006)
  16. 0.171 Serious Happiness (RSP10763)
  17. 0.191 UP Sunrise (RSP10989)
  18. 0.192 Golden Goat 2 (RSP10991)
  19. 0.200 OR 05MAY2017 (RSP10940)
  20. 0.202 Italian Kiss (RSP10990)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.456 Cherry Blossom (RSP11311)
  2. 0.455 Cherry Blossom (RSP11328)
  3. 0.444 Cherry Blossom (RSP11312)
  4. 0.441 BagSeed (RSP12627)
  5. 0.431 Cherry Blossom (RSP11298)
  6. 0.430 Cherry Blossom (RSP11314)
  7. 0.424 Cherry Blossom (RSP11317)
  8. 0.422 Cherry Blossom (RSP11309)
  9. 0.421 80E (RSP11213)
  10. 0.417 Carmaleonte (RSP11207)
  11. 0.416 Cherry Blossom (RSP11323)
  12. 0.416 Unknown--Cherry Wine---003- (RSP11270)
  13. 0.414 CS (RSP11208)
  14. 0.411 80E (RSP11211)
  15. 0.409 Cherry Blossom (RSP11308)
  16. 0.409 Feral (RSP11205)
  17. 0.409 CS Indica (RSP11658)
  18. 0.408 Cherry Blossom (RSP11335)
  19. 0.404 Candy Kush (RSP11492)
  20. 0.404 Cherry Blossom (RSP11334)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448372
Overlapping SNPs:
119
Concordance:
117

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495218
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
d0abe7bc7a791744f03cf8894c1367a82ba7eb0a029968beb6716cbe0376fd2d
Stamping Certificate
Download PDF (850.6 KB)
SHASUM Hash
d78bea1fd59fd568225e9e64e5d81f8daffc2a24ae02f8c350fa9899a8f3ed01
QR code for RSP11033

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