Advanced Strain Search

Cherry Blossom

RSP 11308

Grower: Yabba Cannaba

General Information

Sample Name
CK6
Accession Date
October 16, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.18%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0595
male female RSP11308

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
FAD2-2

UniProt

c.47_57delTGAATCATACT p.Leu16fs frameshift variant high contig83 1803311

IGV: Start, Jump

GAGTATGATTCA/G
NGS:
0.018
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+2delGT splice donor variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/GAATTTATTTTATTATAA
NGS:
0.004
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.000 Cherry Blossom (RSP11335)
  2. 0.173 Unknown--Cherry Wine---004- (RSP11271)
  3. 0.177 Cherry Blossom (RSP11332)
  4. 0.186 Cherry Blossom (RSP11334)
  5. 0.190 Cherry Blossom (RSP11321)
  6. 0.198 Cherry Blossom (RSP11316)
  7. 0.199 Unknown--Cherry Wine---005- (RSP11272)
  8. 0.200 Cherry Blossom (RSP11320)
  9. 0.205 Cherry Blossom (RSP11311)
  10. 0.205 Lift (RSP11378)
  11. 0.206 Unknown--Cherry Wine---002- (RSP11269)
  12. 0.206 Electra (RSP11366)
  13. 0.212 Cherry Blossom (RSP11327)
  14. 0.214 Cherry Blossom (RSP11299)
  15. 0.215 Cherry Blossom (RSP11302)
  16. 0.216 Cherry Blossom (RSP11317)
  17. 0.216 QLF3 (RSP11453)
  18. 0.224 Cherry Wine (RSP11267)
  19. 0.227 Cherry Blossom (RSP11310)
  20. 0.233 Badger (RSP11614)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
closely related moderately related distantly related
  1. 0.512 JL yellow (RSP11075)
  2. 0.485 JL 3rd Gen Mother (RSP11214)
  3. 0.484 JL 4th Gen 5 (RSP11199)
  4. 0.479 JL 4th Gen 2 (RSP11194)
  5. 0.473 Skunk#18 (RSP11038)
  6. 0.465 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  7. 0.461 Tanao Sri -46- (RSP11486)
  8. 0.459 JL 3rd Gen Mother (RSP11197)
  9. 0.459 JL 4th Gen 1 (RSP11193)
  10. 0.459 Skunk#18 (RSP11030)
  11. 0.459 GG4 (RSP11978)
  12. 0.454 AVIDEKEL 2 0 (RSP11174)
  13. 0.452 JL 4th Gen 4 (RSP11198)
  14. 0.451 RKM-2018-002 (RSP11093)
  15. 0.449 RKM-2018-009 (RSP11100)
  16. 0.447 Sour Raspberry (RSP10551)
  17. 0.447 Center Mark (RSP11629)
  18. 0.446 RKM-2018-010 (RSP11101)
  19. 0.446 JL 4th Gen 6 (RSP11200)
  20. 0.445 Chem 91 (RSP11185)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349297
Overlapping SNPs:
60
Concordance:
37

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495216
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
f85a049e7c6085127b8854c8a5b206290622e758b08779cf01dec9c44bce6e4d
Stamping Certificate
Download PDF (851.9 KB)
SHASUM Hash
b84983faec1048eafb9b161b6f10d1414adc164517f9f3969230c8ac54f11575
QR code for RSP11308

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