Advanced Strain Search

Cherry Blossom

RSP 11321

Grower: Yabba Cannaba

General Information

Sample Name
CJ5
Accession Date
October 16, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.12%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0511
male female RSP11321

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>T p.Lys162Met missense variant moderate contig700 2721188

IGV: Start, Jump

T/A
NGS:
0.007
C90:
0.000
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.138 Unknown--Cherry Wine---001- (RSP11268)
  2. 0.156 Cherry Blossom (RSP11320)
  3. 0.170 Unknown--Cherry Wine---002- (RSP11269)
  4. 0.174 Cherry Blossom (RSP11334)
  5. 0.190 Cherry Blossom (RSP11308)
  6. 0.192 Cherry Blossom (RSP11331)
  7. 0.193 Cherry Blossom (RSP11335)
  8. 0.196 Cherry Blossom (RSP11302)
  9. 0.197 Badger (RSP11614)
  10. 0.203 13 Cherries (RSP11442)
  11. 0.207 Unknown--Cherry Wine---004- (RSP11271)
  12. 0.215 Cherry Blossom (RSP11326)
  13. 0.217 Cherry Blossom (RSP11299)
  14. 0.219 Cherry Blossom (RSP11332)
  15. 0.219 Joy (RSP11380)
  16. 0.221 Cherry Blossom (RSP11301)
  17. 0.222 Electra (RSP11366)
  18. 0.222 Cherry Blossom (RSP11316)
  19. 0.224 Lift (RSP11378)
  20. 0.226 Unknown--Cherry Wine---005- (RSP11272)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.474 80E (RSP11213)
  2. 0.471 80E (RSP11212)
  3. 0.458 80E (RSP11211)
  4. 0.447 Chem 91 (RSP11185)
  5. 0.443 JL yellow (RSP11075)
  6. 0.441 R3in134 (SRR14708219)
  7. 0.440 R1in136 (SRR14708227)
  8. 0.439 Abacus (RSP11266)
  9. 0.437 RKM-2018-022 (RSP11114)
  10. 0.436 Tanao Sri-white -80- (RSP11621)
  11. 0.435 Fatso (RSP11741)
  12. 0.435 R3in134 (SRR14708220)
  13. 0.434 JL 3rd Gen Mother (RSP11214)
  14. 0.433 Brunswick High (RSP11164)
  15. 0.432 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  16. 0.432 BagSeed (RSP12501)
  17. 0.432 R3in134 (SRR14708218)
  18. 0.431 B52 (SRR14708255)
  19. 0.430 Kush Hemp E1 (RSP11128)
  20. 0.430 XBL1 (SRR14708207)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448327
Overlapping SNPs:
66
Concordance:
39

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495227
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
b83044a7464b4439ab73173f991bf7538c42b1fff381080d0864ece6c696830e
Stamping Certificate
Download PDF (850.1 KB)
SHASUM Hash
a535cc9ac13f31b8a05cf3f2dae17ab702000e72e9e8b68848d89a6f95c607e2
QR code for RSP11321

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