Cherry Blossom
RSP 11322
Grower: Yabba Cannaba
General Information
- Sample Name
- CK7
- Accession Date
- October 17, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.
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This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).
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This chart represents the Illumina sequence coverage over the CBCA synthase gene.
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Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-4b | c.556A>G | p.Arg186Gly | missense variant & splice region variant | moderate | contig700 | 2721117 | T/C |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
FAD2-2 | c.110C>T | p.Ala37Val | missense variant | moderate | contig83 | 1803259 | G/A |
|
FAD2-2 | c.62C>T | p.Pro21Leu | missense variant | moderate | contig83 | 1803307 | G/A |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.131 Cherry Blossom (RSP11306)
- 0.145 Cherry Blossom (RSP11313)
- 0.163 Cherry Blossom (RSP11304)
- 0.170 Unknown--Cherry Wine---005- (RSP11272)
- 0.181 Cherry Blossom (RSP11329)
- 0.194 Cherry Blossom (RSP11327)
- 0.195 Cherry Blossom (RSP11320)
- 0.209 Cherry Blossom (RSP11315)
- 0.212 QLF4 (RSP11441)
- 0.212 Cherry Blossom (RSP11325)
- 0.214 Cherry Blossom (RSP11326)
- 0.217 Cherry Blossom (RSP11330)
- 0.220 Blue Dream (RSP11010)
- 0.221 Cherry Blossom (RSP11333)
- 0.221 Cherry Blossom (RSP11301)
- 0.226 Calm (RSP11379)
- 0.228 Electra (RSP11366)
- 0.229 Cherry Blossom (RSP11299)
- 0.229 Super Blue Dream (RSP11011)
- 0.231 Blue Dream (RSP11004)
Most genetically distant strains (All Samples)
- 0.492 Northern Lights (RSP11501)
- 0.472 Big Bud (SRR14708270)
- 0.468 Ruderalis Indica (SRR14708267)
- 0.466 Star Dawg (RSP11352)
- 0.464 BagSeed (RSP12501)
- 0.457 BagSeed (RSP12627)
- 0.454 Cherry Lime Runtz (RSP12486)
- 0.452 RKM-2018-002 (RSP11093)
- 0.452 Fatso (RSP11741)
- 0.450 Candy Kush (RSP11492)
- 0.450 Right Mark (RSP11628)
- 0.447 Skunk#18 (RSP11030)
- 0.446 R3in134 (SRR14708220)
- 0.445 JABBA S STASH (RSP11348)
- 0.445 Juicy Gummy x Royal Kush (RSP12484)
- 0.443 R1in136 (SRR14708237)
- 0.442 Skunk#18 (RSP11038)
- 0.442 R3in134 (SRR14708218)
- 0.441 Juso14 (SRR14708259)
- 0.441 GMO x [REDACTED] #43 (RSP11976)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 65
- Concordance:
- 39
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 7
- Concordance:
- 6
Blockchain Registration Information
- Transaction ID
-
b7c164ac5e3abf62
4d42a79cd379cd78 a8e1e0b021fd24e8 4c798992b1ade443 - Stamping Certificate
- Download PDF (850.8 KB)
- SHASUM Hash
-
64c0078182ddd2bb
a6e599337ebc8588 e7bf2a8130154753 ebb477ad8289b6e8