JABBA'S STASH
RSP 11348
Grower: Happy Valley
Summary
JABBA'S STASH (RSP11348/Happy Valley) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is The Gift (RSP10988/Manoa Botanicals) and it is a potential sibling. The heterozygosity rate is 1.19% which is higher than average (67.3 percentile).
General Information
- Accession Date
- October 22, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.
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This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).
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This chart represents the Illumina sequence coverage over the CBCA synthase gene.
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Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1945149 | C/T |
|
PKSG-2a | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1945150 | A/C |
|
PKSG-2a | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1945160 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.188T>G | p.Ile63Ser | missense variant | moderate | contig700 | 1945202 | A/C |
|
PKSG-2a | c.188T>A | p.Ile63Asn | missense variant | moderate | contig700 | 1945202 | A/T |
|
PKSG-2a | c.187A>T | p.Ile63Phe | missense variant | moderate | contig700 | 1945203 | T/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
aPT4 | c.16G>A | p.Val6Ile | missense variant | moderate | contig121 | 2828672 | G/A |
|
aPT4 | c.35A>C | p.Gln12Pro | missense variant | moderate | contig121 | 2828691 | A/C |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.216A>T | p.Lys72Asn | missense variant | moderate | contig121 | 2828872 | A/T |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.186 RKM-2018-008 (RSP11099)
- 0.206 The Gift (RSP10988)
- 0.214 MENDO BREATH (RSP11242)
- 0.220 Mendo Purple (RSP11494)
- 0.222 ILM (RSP12623)
- 0.225 New BSR (RSP12104)
- 0.227 Sunday Driver (RSP11071)
- 0.227 RKM-2018-034 (RSP11126)
- 0.229 Pure Power Plant (RSP11265)
- 0.230 GMO x Poison Momosa (RSP12500)
- 0.231 Eagle Scout T-111 (RSP11625)
- 0.232 GMO x The inhaler (RSP12508)
- 0.232 Golden Road (RSP11345)
- 0.233 Square Wave (RSP11344)
- 0.233 Deadhead OG (RSP11463)
- 0.233 Mendo Breath (RSP11747)
- 0.235 Black Triangle (RSP11638)
- 0.236 Gorilla Cookies (RSP11231)
- 0.237 Hermaphrodite ResearchSample2 (RSP11050)
- 0.239 GMO x Poison Momosa (RSP12626)
Most genetically distant strains (All Samples)
- 0.460 Cherry Blossom (RSP11306)
- 0.452 Cherry Blossom (RSP11328)
- 0.445 Cherry Blossom (RSP11322)
- 0.442 Cherry Blossom (RSP11309)
- 0.442 Wife (RSP11148)
- 0.439 Cherry Blossom (RSP11325)
- 0.438 Cherry Blossom (RSP11300)
- 0.437 Cherry Blossom (RSP11301)
- 0.437 Cherry Blossom (RSP11298)
- 0.434 Cherry Blossom (RSP11318)
- 0.433 Cherry Blossom (RSP11330)
- 0.430 AVIDEKEL 2 0 (RSP11174)
- 0.429 Cherry Blossom (RSP11323)
- 0.423 Cherry Blossom (RSP11312)
- 0.420 Chematonic -Cannatonic x Chemdawg- (RSP11394)
- 0.418 Tanao Sri -46- (RSP11486)
- 0.416 AVIDEKEL USA (RSP11169)
- 0.416 Cherry Blossom (RSP11317)
- 0.414 JL x NSPM1 4 (RSP11482)
- 0.411 Unknown--Cherry Wine---003- (RSP11270)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 62
- Concordance:
- 42
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 6
- Concordance:
- 6
Blockchain Registration Information
- Transaction ID
-
2346207128a4788b
64293eb994d952e2 04e92b5c566e3b29 00eade7cfec22c89 - Stamping Certificate
- Download PDF (861.4 KB)
- SHASUM Hash
-
19183747fd625cc6
50cf8536c6e95ee8 5aeb638f0f3763dd 53b730df227a668a