Advanced Strain Search

AVIDEKEL USA

RSP 11169

Grower: TIkun Olam

General Information

Sample Name
AVI High Test
Accession Date
June 24, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.52%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0448
male female RSP11169

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1delATA p.Met1del start lost & conservative inframe deletion high contig700 1951880

IGV: Start, Jump

ATAT/A
NGS:
0.009
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-1

UniProt

c.20G>T p.Cys7Phe missense variant moderate contig380 235947

IGV: Start, Jump

C/A
NGS:
0.020
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.1140A>C p.Lys380Asn missense variant moderate contig380 285582

IGV: Start, Jump

T/G
NGS:
0.018
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.146 RAPHAEL #2 (RSP11172)
  2. 0.193 Avidekel 05MAY2017 (RSP10938)
  3. 0.214 Midnight 05MAY2017 (RSP10941)
  4. 0.227 Cbot-2019-003 (RSP11131)
  5. 0.234 Cherry Wine (RSP11145)
  6. 0.235 RAPHAEL #4 (RSP11173)
  7. 0.238 Electra (RSP11366)
  8. 0.242 Joy (RSP11380)
  9. 0.243 Cbot-2019-002 (RSP11130)
  10. 0.255 Lifter (RSP11365)
  11. 0.255 CST (RSP11002)
  12. 0.258 Suver Haze (RSP11364)
  13. 0.260 Domnesia (RSP11184)
  14. 0.261 Wife (RSP11148)
  15. 0.262 Cherry Wine (RSP11305)
  16. 0.263 Doug s Varin (RSP11243)
  17. 0.264 Cherry Wine (RSP11307)
  18. 0.265 Durban Poison #1 (RSP11013)
  19. 0.267 Otto (RSP11147)
  20. 0.267 Sour Tsunami (RSP11187)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.461 Northern Skunk (RSP11456)
  2. 0.452 Cherry Blossom (RSP11318)
  3. 0.443 Cherry Blossom (RSP11324)
  4. 0.440 Cherry Blossom (RSP11333)
  5. 0.432 UP Wendigo (RSP11261)
  6. 0.428 Cherry Blossom (RSP11326)
  7. 0.426 RKM-2018-026 (RSP11118)
  8. 0.424 GMO x Garlic Breath (RSP12507)
  9. 0.423 RKM-2018-019 (RSP11111)
  10. 0.422 Ruderalis Indica (SRR14708267)
  11. 0.421 Cherry Blossom (RSP11302)
  12. 0.421 Black Triangle (RSP11638)
  13. 0.421 GG4 (RSP11978)
  14. 0.419 80E (RSP11213)
  15. 0.416 JABBA S STASH (RSP11348)
  16. 0.416 ILM (RSP12623)
  17. 0.415 Big Bud (SRR14708270)
  18. 0.415 GMO x [REDACTED] #43 (RSP11976)
  19. 0.413 New BSR (RSP12104)
  20. 0.412 Kush Hemp E1 (RSP11128)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346396
Overlapping SNPs:
98
Concordance:
71

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495276
Overlapping SNPs:
13
Concordance:
12

Blockchain Registration Information

Transaction ID
ffc905b0f1cbeabe6f98dfa015a5309b5000c4657752237a2c4292969344b6c2
Stamping Certificate
Download PDF (850.8 KB)
SHASUM Hash
4a64dfefe027d8eb44a41b43c0bbed2d2bea95a550ac7efbea53e863a4c7fdfd
QR code for RSP11169

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