RKM-2018-019
RSP 11111
Grower: R-Kiem Seeds
General Information
- Accession Date
- October 21, 2018
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.697_709del |
p.Phe233fs | frameshift variant | high | contig121 | 2830974 |
TTTTAGATGGAA |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.225 RKM-2018-001 (RSP11092)
- 0.233 RKM-2018-022 (RSP11114)
- 0.233 Eagle Scout T-111 (RSP11625)
- 0.239 White Label 3 (RSP11338)
- 0.240 Big Bud (RSP11221)
- 0.244 North Traveler (RSP11163)
- 0.245 Miss X (RSP10999)
- 0.246 Flo (RSP11232)
- 0.249 Erez 05MAY2017 (RSP10942)
- 0.249 Trump x Trump (RSP11466)
- 0.253 Strawberry Cough (RSP11356)
- 0.253 White Chronic (RSP11220)
- 0.255 Wild Thailand (SRR14708216)
- 0.255 Alaska USA (RSP11171)
- 0.256 Dominion Skunk (RSP11354)
- 0.256 Liberty Haze (RSP11000)
- 0.258 Rest (RSP11377)
- 0.258 Lift (RSP11378)
- 0.259 Liberty Haze (RSP10946)
- 0.259 Electra (RSP11366)
Most genetically distant strains (All Samples)
- 0.457 Cherry Blossom (RSP11323)
- 0.455 Cherry Blossom (RSP11328)
- 0.449 Cherry Blossom (RSP11298)
- 0.449 Cherry Blossom (RSP11309)
- 0.440 Chematonic -Cannatonic x Chemdawg- (RSP11394)
- 0.437 Tanao Sri -46- (RSP11486)
- 0.436 Cherry Blossom (RSP11306)
- 0.434 Unknown--Cherry Wine---003- (RSP11270)
- 0.429 Chem 91 (RSP11185)
- 0.429 Cherry Blossom (RSP11301)
- 0.427 Ringo s Gift -Katie s Cut- (RSP11624)
- 0.427 Cherry Blossom (RSP11325)
- 0.424 JL yellow (RSP11075)
- 0.423 AVIDEKEL USA (RSP11169)
- 0.416 Cherry Blossom CBG (RSP11303)
- 0.415 JL 3rd Gen Mother (RSP11214)
- 0.414 Lemon Skunk (RSP11229)
- 0.413 Avidekel 05MAY2017 (RSP10938)
- 0.412 AVIDEKEL 2 0 (RSP11174)
- 0.410 GG4 (RSP11978)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 93
- Concordance:
- 59
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2
Blockchain Registration Information
- Transaction ID
-
d06e2d0a5187b158
6ce55c61ff36068f 4aa5e7f0e2413ca9 6b9d1728091b109c - Stamping Certificate
- Download PDF (852.9 KB)
- SHASUM Hash
-
421c2f4e2f25875f
dd7e3c6b2b10b52f 0c33395b960e1f6f ed8742f1cc1d9460