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Cherry Blossom CBG

RSP 11303

Grower: Yabba Cannaba

General Information

Sample Name
CJ2
Accession Date
October 16, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.13%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0551
male female RSP11303

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.170 Unknown--Cherry Wine---004- (RSP11271)
  2. 0.173 Cherry Blossom (RSP11320)
  3. 0.185 Cherry Blossom (RSP11306)
  4. 0.194 Unknown--Cherry Wine---005- (RSP11272)
  5. 0.197 Cherry Blossom (RSP11299)
  6. 0.205 Cherry Blossom (RSP11315)
  7. 0.210 Cherry Blossom (RSP11309)
  8. 0.210 Cherry Blossom (RSP11325)
  9. 0.212 Cherry Blossom (RSP11313)
  10. 0.213 Sparrow (RSP11443)
  11. 0.215 Cherry Blossom (RSP11329)
  12. 0.219 Cherry Blossom (RSP11304)
  13. 0.220 Cherry Blossom (RSP11332)
  14. 0.227 Cherry Blossom (RSP11316)
  15. 0.228 Cherry Blossom (RSP11298)
  16. 0.234 Electra (RSP11366)
  17. 0.236 Cherry Blossom (RSP11330)
  18. 0.238 Cherry Blossom (RSP11322)
  19. 0.242 Lift (RSP11378)
  20. 0.243 Rest (RSP11377)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.459 JL#2 (RSP11076)
  2. 0.448 RKM-2018-022 (RSP11114)
  3. 0.446 White Label 1 (RSP11336)
  4. 0.443 Cherry Blossom (RSP11318)
  5. 0.440 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  6. 0.436 Queen Dream CBG (RSP11287)
  7. 0.435 JL 4th Gen 2 (RSP11194)
  8. 0.430 Hindu Kush (SRR14708261)
  9. 0.430 CS (RSP11208)
  10. 0.428 B52 (SRR14708255)
  11. 0.427 Northern Lights (RSP11501)
  12. 0.426 R1in136 (SRR14708227)
  13. 0.426 BagSeed (RSP12501)
  14. 0.424 R1in136 (SRR14708226)
  15. 0.423 Alpine Rocket (SRR14708266)
  16. 0.423 Tangerine Haze (RSP10995)
  17. 0.423 BagSeed (RSP12627)
  18. 0.423 Abacus (RSP11266)
  19. 0.423 Dave Pineapple (RSP11626)
  20. 0.422 JL yellow (RSP11075)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448181
Overlapping SNPs:
63
Concordance:
36

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
335520f02423995ac9541f03afeb33f3dd1a2f46395d9a01ef66b7a3b854e866
Stamping Certificate
Download PDF (861.8 KB)
SHASUM Hash
39a974d2d387cbfd3f24f2d651c178e64dfe81ade46113ee8ea74f8ca7ff57da
QR code for RSP11303

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