Advanced Strain Search

Tangerine Haze

RSP 10995

Grower: DigiPath Labs

General Information

Sample Name
F20160629-03-1
Accession Date
August 28, 2017
Reported Plant Sex
Female
DNA Extracted From
Unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
16.5%
CBD + CBDA
0.036%
THCV + THCVA
0.004%
CBC + CBCA
0.017%
CBG + CBGA
0.568%
CBN + CBNA
0.041%

Terpenoids

α-Bisabolol
0.%
Borneol
n/a
Camphene
0.002%
Carene
0.022%
Caryophyllene oxide
0.004%
β-Caryophyllene
0.165%
Fenchol
n/a
Geraniol
0.001%
α-Humulene
0.082%
Limonene
0.023%
Linalool
0.013%
Myrcene
0.045%
α-Phellandrene
n/a
Terpinolene
0.218%
α-Terpineol
n/a
α-Terpinene
0.015%
γ-Terpinene
0.267%
Total Nerolidol
0.022%
Total Ocimene
0.134%
α-Pinene
0.033%
β-Pinene
0.047%

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.72%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0383
male female RSP10995

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.130 Saint Jack (RSP11179)
  2. 0.141 RKM-2018-006 (RSP11097)
  3. 0.141 RKM-2018-011 (RSP11102)
  4. 0.146 Jacks Cleaner (RSP11347)
  5. 0.165 BLACK JACK (RSP11346)
  6. 0.172 Green Crack (RSP11339)
  7. 0.172 RKM-2018-016 (RSP11108)
  8. 0.172 RKM-2018-025 (RSP11117)
  9. 0.174 Black Jack (RSP10603)
  10. 0.175 Italian Kiss (RSP11034)
  11. 0.176 PWE (RSP11369)
  12. 0.183 Italian Kiss (RSP10990)
  13. 0.193 UP Sunrise (RSP10989)
  14. 0.198 RKM-2018-007 (RSP11098)
  15. 0.199 Durban Poison (RSP10998)
  16. 0.203 RKM-2018-027 (RSP11119)
  17. 0.205 Cheese (RSP10460)
  18. 0.206 Blue Dream (RSP11010)
  19. 0.207 Gold Cracker (RSP11041)
  20. 0.208 Blue Dream (RSP11007)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.472 Cherry Blossom (RSP11334)
  2. 0.470 Cherry Blossom (RSP11328)
  3. 0.464 Cherry Blossom (RSP11311)
  4. 0.457 Cherry Blossom (RSP11309)
  5. 0.439 Cherry Blossom (RSP11314)
  6. 0.437 Cherry Blossom (RSP11323)
  7. 0.430 Cherry Blossom (RSP11298)
  8. 0.430 Cherry Blossom (RSP11335)
  9. 0.427 Cherry Blossom (RSP11308)
  10. 0.426 Right Mark (RSP11628)
  11. 0.423 Cherry Blossom CBG (RSP11303)
  12. 0.423 Cherry Blossom (RSP11333)
  13. 0.421 Red Eye OG (RSP11190)
  14. 0.418 RKM-2018-026 (RSP11118)
  15. 0.416 Kush Hemp E1 (RSP11128)
  16. 0.415 Cherry Blossom (RSP11317)
  17. 0.414 ILM (RSP12623)
  18. 0.412 Cherry Blossom (RSP11312)
  19. 0.412 Unknown--Cherry Wine---003- (RSP11270)
  20. 0.411 Cherry Blossom (RSP11321)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448499
Overlapping SNPs:
112
Concordance:
109

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495267
Overlapping SNPs:
13
Concordance:
13

Blockchain Registration Information

Transaction ID
5eac7a9baea12966c8628c73f08057775c82f96cfda2c34071ea4e42c293564b
Stamping Certificate
Download PDF (864.5 KB)
SHASUM Hash
29fcd60ef3cde35caba1f2b96d80bae474c06da55d73d524bd4506c39c66347c
QR code for RSP10995

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