Advanced Strain Search

RKM-2018-007

RSP 11098

Grower: R-Kiem Seeds

General Information

Accession Date
September 6, 2018
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.89%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0435
male female RSP11098

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1944456

IGV: Start, Jump

G/C
NGS:
0.070
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
aPT1

UniProt

c.160A>C p.Thr54Pro missense variant moderate contig121 2835867

IGV: Start, Jump

A/C
NGS:
0.086
C90:
0.048
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.670T>A p.Ser224Thr missense variant moderate contig121 2840278

IGV: Start, Jump

T/A
NGS:
0.077
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.198 Tangerine Haze (RSP10995)
  2. 0.203 Cheese (RSP10460)
  3. 0.216 Serious Happiness (RSP10763)
  4. 0.216 Italian Kiss (RSP11034)
  5. 0.221 Italian Kiss (RSP10990)
  6. 0.227 RKM-2018-003 (RSP11094)
  7. 0.228 OR 05MAY2017 (RSP10940)
  8. 0.229 RKM-2018-011 (RSP11102)
  9. 0.234 Domnesia (RSP11184)
  10. 0.234 PP9 (SRR14708260)
  11. 0.234 Gold Cracker (RSP11048)
  12. 0.236 Gold Cracker (RSP11041)
  13. 0.236 Durban Poison (RSP11014)
  14. 0.237 CST (RSP11002)
  15. 0.237 Durban Poison #1 (RSP11013)
  16. 0.238 Black Jack (RSP10603)
  17. 0.240 RKM-2018-030 (RSP11122)
  18. 0.240 BLACK JACK (RSP11346)
  19. 0.241 Durban Poison #1 (RSP10996)
  20. 0.241 UP Sunrise (RSP10989)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.457 Cherry Blossom (RSP11311)
  2. 0.443 Cherry Blossom (RSP11328)
  3. 0.425 Cherry Blossom (RSP11333)
  4. 0.423 Cherry Blossom (RSP11334)
  5. 0.418 Cherry Blossom (RSP11317)
  6. 0.414 Cherry Blossom (RSP11324)
  7. 0.413 Cherry Blossom (RSP11314)
  8. 0.409 Absolute OG (RSP11455)
  9. 0.409 Cherry Blossom (RSP11309)
  10. 0.409 Cherry Blossom (RSP11312)
  11. 0.405 RKM-2018-012 (RSP11103)
  12. 0.403 Cherry Blossom (RSP11323)
  13. 0.402 Red Eye OG (RSP11190)
  14. 0.401 Cherry Blossom (RSP11300)
  15. 0.398 Cherry Blossom (RSP11308)
  16. 0.397 Cherry Blossom (RSP11335)
  17. 0.397 East side OG (RSP12089)
  18. 0.395 CHEM4 (RSP12090)
  19. 0.394 GG4 (RSP11978)
  20. 0.394 CS Indica (RSP11658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346533
Overlapping SNPs:
111
Concordance:
66

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495190
Overlapping SNPs:
8
Concordance:
6

Blockchain Registration Information

Transaction ID
22ffdc964d997f56f0aafb8af194e4b50b31c9486df539ac56a702446a037cd5
Stamping Certificate
Download PDF (863.8 KB)
SHASUM Hash
96016eec83413b89423099fe5eb5e988309299fa09c102082786908f895f32a0
QR code for RSP11098

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