Advanced Strain Search

Black Jack

RSP 10603

Grower: Gravitas

General Information

Sample Name
F20161210-01-4
Accession Date
January 30, 2017
Reported Plant Sex
not reported
DNA Extracted From
Unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.61%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0466
male female RSP10603

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.003 RKM-2018-025 (RSP11117)
  2. 0.004 RKM-2018-016 (RSP11108)
  3. 0.005 BLACK JACK (RSP11346)
  4. 0.039 RKM-2018-027 (RSP11119)
  5. 0.132 Durban Poison #1 (RSP11013)
  6. 0.133 Durban Poison #1 (RSP10996)
  7. 0.134 Saint Jack (RSP11179)
  8. 0.135 Durban Poison (RSP10998)
  9. 0.139 Durban Poison (RSP11014)
  10. 0.152 Cheese (RSP10460)
  11. 0.152 Gold Cracker (RSP11048)
  12. 0.153 Gold Cracker (RSP11041)
  13. 0.155 Electra (RSP11366)
  14. 0.156 Lift (RSP11378)
  15. 0.156 Blue Dream (RSP11007)
  16. 0.159 Durban Poison (RSP11226)
  17. 0.167 Rest (RSP11377)
  18. 0.172 UP Sunrise (RSP10989)
  19. 0.174 Tangerine Haze (RSP10995)
  20. 0.174 Blue Dream (RSP11004)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.445 Cherry Blossom (RSP11323)
  2. 0.410 CS (RSP11208)
  3. 0.404 Cherry Blossom (RSP11328)
  4. 0.402 Cherry Blossom (RSP11311)
  5. 0.399 Cherry Blossom (RSP11298)
  6. 0.391 Feral (RSP11205)
  7. 0.389 Cherry Blossom (RSP11309)
  8. 0.388 80E (RSP11213)
  9. 0.384 Cherry Blossom (RSP11314)
  10. 0.383 Cherry Blossom (RSP11312)
  11. 0.382 Unknown--Cherry Wine---001- (RSP11268)
  12. 0.382 Cherry Blossom (RSP11274)
  13. 0.381 Feral (RSP11206)
  14. 0.379 Cherry Blossom (RSP11318)
  15. 0.379 R1in136 (SRR14708227)
  16. 0.377 Fatso (RSP11741)
  17. 0.377 BagSeed (RSP12627)
  18. 0.376 Carmaleonte (RSP11207)
  19. 0.375 Red Eye OG (RSP11190)
  20. 0.375 Unknown--Cherry Wine---003- (RSP11270)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349002
Overlapping SNPs:
76
Concordance:
71

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495298
Overlapping SNPs:
10
Concordance:
10

Blockchain Registration Information

Transaction ID
fcfbfc7aa918246bd9fe26a44c7bed1f569a572d0d845fc3f31dd09247e5c1d9
Stamping Certificate
Download PDF (845.2 KB)
SHASUM Hash
284f2810cf26cc4733ed01a9378b130578a04d022185d61e142d193ce8ef3664
QR code for RSP10603

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