Advanced Strain Search

Liberty Haze

RSP 10946

Grower: DigiPath Labs

General Information

Sample Name
F20170104-01-5
Accession Date
May 4, 2017
Reported Plant Sex
Female
DNA Extracted From
Unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
14.8%
CBD + CBDA
0.02%
THCV + THCVA
0.01%
CBC + CBCA
0.%
CBG + CBGA
0.762%
CBN + CBNA
0.092%

Terpenoids

α-Bisabolol
0.004%
Borneol
n/a
Camphene
0.002%
Carene
0.04%
Caryophyllene oxide
0.002%
β-Caryophyllene
0.071%
Fenchol
n/a
Geraniol
0.%
α-Humulene
0.104%
Limonene
0.034%
Linalool
0.012%
Myrcene
0.078%
α-Phellandrene
n/a
Terpinolene
0.231%
α-Terpineol
n/a
α-Terpinene
0.023%
γ-Terpinene
0.334%
Total Nerolidol
0.014%
Total Ocimene
0.11%
α-Pinene
0.069%
β-Pinene
0.099%

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.93%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0498
male female RSP10946

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
DXR-1

UniProt

c.20G>T p.Cys7Phe missense variant moderate contig380 235947

IGV: Start, Jump

C/A
NGS:
0.020
C90:
0.000
DXR-2

UniProt

c.1140A>C p.Lys380Asn missense variant moderate contig380 285582

IGV: Start, Jump

T/G
NGS:
0.018
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.008 Liberty Haze (RSP11000)
  2. 0.151 Electra (RSP11366)
  3. 0.171 Alaska USA (RSP11171)
  4. 0.173 Erez 05MAY2017 (RSP10942)
  5. 0.175 Lift (RSP11378)
  6. 0.177 Trump x Trump (RSP11466)
  7. 0.180 Doug s Varin (RSP11243)
  8. 0.183 Rest (RSP11377)
  9. 0.187 RKM-2018-031 (RSP11123)
  10. 0.188 Domnesia (RSP11184)
  11. 0.189 UnObtanium (RSP11611)
  12. 0.190 Joy (RSP11380)
  13. 0.192 Big Bud (RSP11221)
  14. 0.192 Queen Dream CBG (RSP11296)
  15. 0.197 Serious Happiness (RSP10763)
  16. 0.198 Suver Haze (RSP11364)
  17. 0.199 Durban Poison #1 (RSP10996)
  18. 0.199 Hot Blonde (RSP11292)
  19. 0.200 RKM-2018-001 (RSP11092)
  20. 0.201 Blueberry Cheesecake (RSP10684)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
closely related moderately related distantly related
  1. 0.405 Cherry Blossom (RSP11323)
  2. 0.391 Unknown--Cherry Wine---001- (RSP11268)
  3. 0.390 JL yellow (RSP11075)
  4. 0.378 JL 3rd Gen Mother (RSP11214)
  5. 0.375 80E (RSP11213)
  6. 0.373 Feral (RSP11205)
  7. 0.372 Danny Noonan (RSP11070)
  8. 0.372 GMO x [REDACTED] #43 (RSP11976)
  9. 0.369 GMO x Garlic Breath (RSP12507)
  10. 0.366 Cherry Blossom (RSP11318)
  11. 0.366 Cherry Blossom (RSP11311)
  12. 0.363 Northern Lights (RSP11501)
  13. 0.363 Chem 91 (RSP11185)
  14. 0.363 IUP3 (SRR14708256)
  15. 0.363 Unknown--Cherry Wine---003- (RSP11270)
  16. 0.362 JL 3rd Gen Mother (RSP11197)
  17. 0.361 Tanao Sri -46- (RSP11486)
  18. 0.361 Cherry Blossom (RSP11328)
  19. 0.359 Feral (RSP10892)
  20. 0.359 80E (RSP11211)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448275
Overlapping SNPs:
96
Concordance:
62

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495248
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
87f0078d6fcb275fc5c3d6598a7f788d3984473aa129cb0f75fbcb9d46b57192
Stamping Certificate
Download PDF (847.8 KB)
SHASUM Hash
94e059bd1accb790d2eb8f730de73e4aab9ae420f04cc0e1979bcd924e27726d
QR code for RSP10946

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