JL_Tent_3
RSP 11490
Grower: Kevin Mckernan
General Information
- Accession Date
- May 21, 2020
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Unknown
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
FAD2-2 | c.62C>T | p.Pro21Leu | missense variant | moderate | contig83 | 1803307 | G/A |
|
FAD2-2 | c.23G>A | p.Ser8Asn | missense variant | moderate | contig83 | 1803346 | C/T |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.005 JL Tent 2 (RSP11489)
- 0.040 JL Cross 28 (RSP11529)
- 0.057 JL Cross 18 (RSP11519)
- 0.058 JL X NSPM1 7 (RSP11469)
- 0.062 JL X NSPM1 14 (RSP11473)
- 0.069 JL Cross 21 (RSP11522)
- 0.072 JL x NSPM1 3 (RSP11481)
- 0.085 JL Cross 9 (RSP11510)
- 0.090 JL Cross 17 (RSP11518)
- 0.092 JL Cross 19 (RSP11520)
- 0.095 JL Cross 23 (RSP11524)
- 0.101 JL X NSPM1 21 (RSP11474)
- 0.103 JL X NSPM1 6 (RSP11468)
- 0.103 JL x NSPM1 1 5 (RSP11479)
- 0.106 JL Cross 26 (RSP11527)
- 0.106 JL x NSPM1 1 (RSP11478)
- 0.111 JL Cross 24 (RSP11525)
- 0.113 JL Tent 4 (RSP11491)
- 0.123 JL Tent 1 yellow stake (RSP11488)
- 0.126 JL Cross 2 (RSP11503)
Most genetically distant strains (All Samples)
- 0.474 80E (RSP11213)
- 0.453 80E (RSP11212)
- 0.448 80E (RSP11211)
- 0.438 CS (RSP11208)
- 0.433 CS Indica (RSP11658)
- 0.430 Carmaleonte (RSP11207)
- 0.423 Northern Lights (RSP11501)
- 0.419 Tanao Sri -46- (RSP11486)
- 0.418 Tanao Sri-white -80- (RSP11621)
- 0.417 Squirrel Tail -81- (RSP11622)
- 0.416 Feral (RSP11206)
- 0.413 Feral (RSP11205)
- 0.412 Cbot-2019-005 (RSP11133)
- 0.412 Cherry Blossom (RSP11318)
- 0.411 Feral (RSP10891)
- 0.411 IBE (SRR14708228)
- 0.409 Carmagnola (RSP11202)
- 0.409 XBL1 (SRR14708207)
- 0.406 Cherry Blossom (RSP11323)
- 0.406 VIR 483 (SRR14708239)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 91
- Concordance:
- 56
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
f59e41b40275bf65
d5d90919ab747936 8b435458a9c16ec5 2db2165ba2513187 - Stamping Certificate
- Download PDF (39.8 KB)
- SHASUM Hash
-
0c96542863b2c2eb
633533859c876db6 7d070e35f985df04 1c978ef9954a5c41