Advanced Strain Search

JL Cross 24

RSP 11525

Grower: Kevin McKernan

General Information

Accession Date
June 17, 2020
Reported Plant Sex
not reported
DNA Extracted From
Unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.89%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0441
male female RSP11525

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_83delGT p.Val28fs frameshift variant high contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/CAACCGGAACT
NGS:
0.002
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.033 0.067 0.100 0.133
closely related moderately related distantly related
  1. 0.064 JL Cross 27 (RSP11528)
  2. 0.081 JL Cross 26 (RSP11527)
  3. 0.091 JL X NSPM1 7 (RSP11469)
  4. 0.092 JL Cross 2 (RSP11503)
  5. 0.092 JL X NSPM1 11 (RSP11471)
  6. 0.096 JL Tent 1 yellow stake (RSP11488)
  7. 0.096 JL Tent 2 (RSP11489)
  8. 0.105 JL X NSPM1 6 (RSP11468)
  9. 0.109 JL X NSPM1 14 (RSP11473)
  10. 0.111 JL Tent 3 (RSP11490)
  11. 0.111 JL X NSPM1 5 (RSP11467)
  12. 0.117 JL x NSPM1 1 5 (RSP11479)
  13. 0.119 JL Cross 15 (RSP11516)
  14. 0.120 JL Cross 22 (RSP11523)
  15. 0.122 JL x NSPM1 1 (RSP11478)
  16. 0.123 JL Cross 21 (RSP11522)
  17. 0.124 JL x NSPM1 2 (RSP11480)
  18. 0.126 JL x NSPM1 3 (RSP11481)
  19. 0.126 JL X NSPM1 22 (RSP11475)
  20. 0.132 JL Cross 19 (RSP11520)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.460 80E (RSP11213)
  2. 0.436 80E (RSP11212)
  3. 0.435 80E (RSP11211)
  4. 0.428 Cbot-2019-005 (RSP11133)
  5. 0.426 CS (RSP11208)
  6. 0.421 Northern Lights (RSP11501)
  7. 0.415 Tanao Sri-white -80- (RSP11621)
  8. 0.410 BagSeed (RSP12627)
  9. 0.410 Carmaleonte (RSP11207)
  10. 0.407 Feral (RSP11205)
  11. 0.406 Danny Noonan (RSP11070)
  12. 0.405 AVIDEKEL 2 0 (RSP11174)
  13. 0.403 Northern Skunk (RSP11456)
  14. 0.403 CS Indica (RSP11658)
  15. 0.403 R1in136 (SRR14708226)
  16. 0.403 Feral (RSP10890)
  17. 0.402 IUP3 (SRR14708256)
  18. 0.401 Squirrel Tail -81- (RSP11622)
  19. 0.401 R3in134 (SRR14708218)
  20. 0.401 Feral (RSP10891)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450115
Overlapping SNPs:
71
Concordance:
49

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495164
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

SHASUM Hash
8710265e07258136a698b42dddd2e4ac70ce76972fa98acecda04a7489f88450
QR code for RSP11525

Kannapedia uses cookies

By clicking Allow All, you agree to the storing of cookies on your device to enhance site navigation, analyze site usage, and assist in our marketing efforts.

Customize Settings