Advanced Strain Search

Sour D

RSP 11343

Grower: Happy Valley

Summary

Sour D (RSP11343/Happy Valley) is a genetic Type I plant and its genetics appear uncommon. The sample's closest relative in the database is New York City Deisel (RSP11225/Los Suenos Farms) and it is a probable clone. The heterozygosity rate is 1.03% which is average (38.6 percentile).

General Information

Accession Date
October 17, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.03%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0483
male female RSP11343

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.617A>G p.Tyr206Cys missense variant moderate contig700 1938028

IGV: Start, Jump

A/G
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.626_628delATA p.Asn209del disruptive inframe deletion moderate contig700 1938032

IGV: Start, Jump

CAAT/C
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.000 New York City Deisel (RSP11225)
  2. 0.004 East Coast Sour Diesel (RSP10243)
  3. 0.112 RKM-2018-002 (RSP11093)
  4. 0.140 Dave Alaska (RSP11627)
  5. 0.146 Dog Patch (RSP11725)
  6. 0.161 Super Sour Diesel (RSP11191)
  7. 0.162 Motor Breath #15 (RSP12093)
  8. 0.163 CHEM4 (RSP12090)
  9. 0.164 SourD (RSP12092)
  10. 0.169 Star Dawg (RSP11352)
  11. 0.174 501st OG (RSP11241)
  12. 0.176 Peach Cresendo (RSP12483)
  13. 0.179 Chem 91 (RSP11185)
  14. 0.179 Lime OG (RSP12101)
  15. 0.182 Blueberry Cheesecake (RSP10684)
  16. 0.184 RKM-2018-004 (RSP11095)
  17. 0.186 Hermaphrodite Research Sample1 (RSP11042)
  18. 0.187 RKM-2018-004 (RSP11096)
  19. 0.188 unknown (RSP11432)
  20. 0.191 Hermaphrodite Research Sample1 (RSP11049)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.474 Cherry Blossom (RSP11301)
  2. 0.461 Cherry Blossom (RSP11314)
  3. 0.455 Unknown--Cherry Wine---001- (RSP11268)
  4. 0.451 Cherry Blossom (RSP11323)
  5. 0.450 Cherry Blossom (RSP11311)
  6. 0.449 Tiger Tail -30- (RSP11484)
  7. 0.443 Cherry Blossom (RSP11318)
  8. 0.438 Cherry Blossom (RSP11334)
  9. 0.435 JL 4th Gen 5 (RSP11199)
  10. 0.434 Cherry Blossom (RSP11333)
  11. 0.433 Cherry Blossom (RSP11328)
  12. 0.428 JL 3rd Gen Father (RSP11196)
  13. 0.428 Cbot-2019-005 (RSP11133)
  14. 0.428 Cherry Blossom (RSP11325)
  15. 0.427 Cherry Blossom (RSP11306)
  16. 0.426 Cherry Blossom (RSP11324)
  17. 0.426 Cherry Blossom (RSP11317)
  18. 0.424 Feral (RSP11205)
  19. 0.423 Cherry Blossom (RSP11300)
  20. 0.422 Cherry Blossom (RSP11309)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448401
Overlapping SNPs:
65
Concordance:
63

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495239
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
414239325b6352333e5366a948a419860b3c7e3f5b5626df3d175b9bf9f3eee3
Stamping Certificate
Download PDF (871.1 KB)
SHASUM Hash
6f0d8838f60b55bac28b4d9125b8b09d50a2d68fb5842d9fa53980dfa218f942
QR code for RSP11343

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