New York City Deisel
RSP 11225
Grower: Los Suenos Farms
General Information
- Sample Name
- Pheno 689
- Accession Date
- July 7, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Stem
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-4a | c.37C>G | p.Gln13Glu | missense variant | moderate | contig700 | 1936734 | C/G |
|
PKSG-4a | c.617A>G | p.Tyr206Cys | missense variant | moderate | contig700 | 1938028 | A/G |
|
PKSG-4a |
c.626_628del |
p.Asn209del | disruptive inframe deletion | moderate | contig700 | 1938032 | CAAT/C |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1944273 | T/C | |
PKSG-2a | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1945149 | C/T |
|
PKSG-2a | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1945150 | A/C |
|
PKSG-2a | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1945160 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
aPT4 | c.216A>T | p.Lys72Asn | missense variant | moderate | contig121 | 2828872 | A/T |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
Nearest genetic relatives (All Samples)
- 0.000 Sour D (RSP11343)
- 0.003 East Coast Sour Diesel (RSP10243)
- 0.130 RKM-2018-002 (RSP11093)
- 0.153 Dave Alaska (RSP11627)
- 0.161 Dog Patch (RSP11725)
- 0.167 SourD (RSP12092)
- 0.167 Super Sour Diesel (RSP11191)
- 0.169 CHEM4 (RSP12090)
- 0.176 Peach Cresendo (RSP12483)
- 0.176 Star Dawg (RSP11352)
- 0.178 Motor Breath #15 (RSP12093)
- 0.188 RKM-2018-004 (RSP11095)
- 0.190 RKM-2018-004 (RSP11096)
- 0.193 501st OG (RSP11241)
- 0.196 Lime OG (RSP12101)
- 0.198 Chem 91 (RSP11185)
- 0.203 unknown (RSP11432)
- 0.206 RKM-2018-032 (RSP11124)
- 0.206 RKM-2018-021 (RSP11113)
- 0.207 RKM-2018-017 (RSP11109)
Most genetically distant strains (All Samples)
- 0.475 Cherry Blossom (RSP11301)
- 0.471 Tiger Tail -30- (RSP11484)
- 0.466 Unknown--Cherry Wine---001- (RSP11268)
- 0.461 80E (RSP11213)
- 0.458 JL 4th Gen 5 (RSP11199)
- 0.456 JL 3rd Gen Father (RSP11196)
- 0.455 Cherry Blossom (RSP11314)
- 0.452 Cherry Blossom (RSP11318)
- 0.450 Feral (RSP11205)
- 0.449 Tanao Sri -46- (RSP11486)
- 0.448 Cherry Blossom (RSP11323)
- 0.446 JL 4th Gen 2 (RSP11194)
- 0.444 Northern Skunk (RSP11456)
- 0.444 JL yellow (RSP11075)
- 0.441 Cherry Blossom (RSP11311)
- 0.441 IUP2 (SRR14708257)
- 0.441 80E (RSP11212)
- 0.441 Brunswick High (RSP11164)
- 0.440 JL 3rd Gen Mother (RSP11214)
- 0.439 Cherry Blossom (RSP11325)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 99
- Concordance:
- 97
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 13
- Concordance:
- 13
Blockchain Registration Information
- Transaction ID
-
945ddfad4fc87c31
2caccb6763faaeba f4105ebd9af0ab2e ac665d40aa3d61ff - Stamping Certificate
- Download PDF (851.7 KB)
- SHASUM Hash
-
87d72c1716ce5558
b276b280bf5c976c 2fb4f38000741457 07bbd7ea052441c8