Lovrin
RSP 10658
Grower: CSU
General Information
- Sample Name
- Lovrin 5
- Accession Date
- February 14, 2017
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
- DNA Extracted From
- Leaf
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.
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This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).
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This chart represents the Illumina sequence coverage over the CBCA synthase gene.
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Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-4b | c.544G>T | p.Gly182Trp | missense variant | moderate | contig700 | 2721129 | C/A |
|
PKSG-4b | c.541G>C | p.Val181Leu | missense variant | moderate | contig700 | 2721132 | C/G |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 | c.679G>C | p.Gly227Arg | missense variant | moderate | contig95 | 1990632 | G/C |
|
Nearest genetic relatives (All Samples)
- 0.143 USO 31 (RSP10983)
- 0.144 USO 31 (RSP10981)
- 0.170 USO31 (RSP10233)
- 0.183 Ivory (RSP10668)
- 0.185 Santhica 27 (RSP10665)
- 0.191 Santhica27 (RSP10056)
- 0.192 R1in136 (SRR14708226)
- 0.193 Santhica27 (RSP11047)
- 0.194 Juso14 (SRR14708259)
- 0.194 Santhica27 (RSP11046)
- 0.194 Diana (RSP10235)
- 0.197 Futura 75 (RSP10664)
- 0.197 Tygra (RSP10667)
- 0.198 Fedora 17 (SRR14708222)
- 0.198 Monoica (RSP10241)
- 0.199 Fedora 17 (RSP11203)
- 0.201 Beniko (SRR14708275)
- 0.203 Fedora 17 (RSP10661)
- 0.203 Santhica 27 (SRR14708211)
- 0.205 R1in136 (SRR14708227)
Most genetically distant strains (All Samples)
- 0.439 Cherry Blossom (RSP11312)
- 0.429 Cherry Blossom (RSP11298)
- 0.423 Cherry Blossom (RSP11323)
- 0.421 Super Sour Diesel (RSP11191)
- 0.421 BagSeed (RSP12627)
- 0.411 Cherry Blossom (RSP11328)
- 0.411 Cherry Blossom (RSP11318)
- 0.410 RKM-2018-002 (RSP11093)
- 0.409 Chem 91 (RSP11185)
- 0.409 BagSeed (RSP12501)
- 0.409 Cherry Blossom (RSP11311)
- 0.408 CHEM4 (RSP12090)
- 0.408 Cherry Blossom (RSP11300)
- 0.405 Cherry Blossom (RSP11331)
- 0.403 Danny Noonan (RSP11070)
- 0.403 Cherry Blossom (RSP11334)
- 0.402 Fatso (RSP11741)
- 0.402 Cherry Blossom (RSP11309)
- 0.400 Deadhead OG (RSP11463)
- 0.398 GG#4 (RSP11461)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 93
- Concordance:
- 72
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 6
- Concordance:
- 5
Blockchain Registration Information
- Transaction ID
-
9075cdf7d534d2fc
acdb9066619a7d76 68bffa39391e17f0 f6fbcb126c9754a8 - Stamping Certificate
- Download PDF (860.2 KB)
- SHASUM Hash
-
1629066679bf921e
088d08f8f4303835 1cd80c9b2d0ae94c 80ad8aab57fb925d