Advanced Strain Search

Ivory

RSP 10668

Grower: CSU

General Information

Sample Name
Ivory 5
Accession Date
February 14, 2017
Reported Plant Sex
Female
DNA Extracted From
Leaf

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.13%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0471
male female RSP10668

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.679G>C p.Gly227Arg missense variant moderate contig95 1990632

IGV: Start, Jump

G/C
NGS:
0.037
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.181 USO 31 (RSP10983)
  2. 0.183 Lovrin (RSP10658)
  3. 0.193 Futura 75 (RSP10664)
  4. 0.195 Carmagnola USO 31 (RSP11204)
  5. 0.196 Santhica27 (RSP11046)
  6. 0.196 Santhica27 (RSP11047)
  7. 0.198 Fedora 17 (RSP10661)
  8. 0.199 Bialobrzeskie (SRR14708244)
  9. 0.199 USO 31 (RSP10981)
  10. 0.201 R1in136 (SRR14708227)
  11. 0.203 Tygra (RSP10667)
  12. 0.206 Santhica27 (RSP10056)
  13. 0.206 Diana (RSP10235)
  14. 0.206 Santhica 27 (SRR14708211)
  15. 0.208 Tisza (RSP10659)
  16. 0.210 Carmagnola (RSP10982)
  17. 0.210 Delta-llosa (SRR14708272)
  18. 0.211 C-930 lot 211005 (RSP12603)
  19. 0.212 Santhica 27 (RSP10665)
  20. 0.215 Beniko (SRR14708275)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.442 Cherry Blossom (RSP11300)
  2. 0.431 Cherry Blossom (RSP11312)
  3. 0.423 New York City Deisel (RSP11225)
  4. 0.422 Up Royale (RSP11257)
  5. 0.421 Chem 91 (RSP11185)
  6. 0.421 Cherry Blossom (RSP11309)
  7. 0.420 Cherry Blossom (RSP11331)
  8. 0.418 JL Cross 11 (RSP11512)
  9. 0.416 Super Sour Diesel (RSP11191)
  10. 0.414 Cherry Blossom (RSP11328)
  11. 0.413 Cherry Blossom (RSP11319)
  12. 0.408 JL Cross 10 (RSP11511)
  13. 0.408 UP Wendigo (RSP11261)
  14. 0.407 RKM-2018-002 (RSP11093)
  15. 0.406 Banana OG (RSP11498)
  16. 0.406 Cherry Blossom (RSP11318)
  17. 0.405 Escape Velocity (RSP11165)
  18. 0.405 JL Cross 13 (RSP11514)
  19. 0.404 Dog Patch (RSP11725)
  20. 0.404 Cherry Blossom (RSP11316)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448674
Overlapping SNPs:
89
Concordance:
81

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495321
Overlapping SNPs:
14
Concordance:
9

Blockchain Registration Information

Transaction ID
8932650d4825bbc824b1e1f99da60b6b0bda796fb8148b4f844f4b6056efeae2
Stamping Certificate
Download PDF (855.9 KB)
SHASUM Hash
10098bffde1cc2df2b025bd3f7a99a7806614d2402d9cf75041705985cecac7a
QR code for RSP10668

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