Advanced Strain Search

Tisza

RSP 10659

Grower: CSU

General Information

Sample Name
Tisza 5
Accession Date
February 14, 2017
Reported Plant Sex
Female
DNA Extracted From
Leaf

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.33%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0454
male female RSP10659

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
aPT4

UniProt

c.517A>T p.Ile173Leu missense variant & splice region variant moderate contig121 2830795

IGV: Start, Jump

A/T
NGS:
0.022
C90:
0.000
aPT4

UniProt

c.634C>A p.Pro212Thr missense variant moderate contig121 2830912

IGV: Start, Jump

C/A
NGS:
0.009
C90:
0.000
aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.178 C-930 lot 211005 (RSP12603)
  2. 0.197 Carmagnola (SRR14708274)
  3. 0.201 Tygra (RSP10667)
  4. 0.202 Tisza (RSP11044)
  5. 0.203 Uniko B (SRR14708278)
  6. 0.203 Santhica27 (RSP11047)
  7. 0.204 Santhica27 (RSP11046)
  8. 0.205 Tisza (RSP11045)
  9. 0.207 Tiborszallasie (RSP11210)
  10. 0.208 Ivory (RSP10668)
  11. 0.210 Carmagnola (RSP10979)
  12. 0.211 Lovrin (RSP10658)
  13. 0.213 Santhica27 (RSP10056)
  14. 0.213 Futura 75 (RSP10664)
  15. 0.213 Carmagnola USO 31 (RSP11204)
  16. 0.214 Diana (RSP10235)
  17. 0.214 R2in135 (SRR14708223)
  18. 0.215 Kyrgyz Gold (RSP11054)
  19. 0.215 KYRG-151 (RSP11052)
  20. 0.215 Santhica 27 (RSP10665)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.439 Cherry Blossom (RSP11323)
  2. 0.417 Chem 91 (RSP11185)
  3. 0.416 Cherry Blossom (RSP11328)
  4. 0.413 Cherry Blossom (RSP11318)
  5. 0.411 Unknown--Cherry Wine---001- (RSP11268)
  6. 0.410 Cherry Blossom (RSP11298)
  7. 0.407 Cherry Blossom (RSP11311)
  8. 0.407 Cherry Blossom (RSP11301)
  9. 0.407 Unknown--Cherry Wine---003- (RSP11270)
  10. 0.403 Cherry Blossom (RSP11312)
  11. 0.403 Northern Lights (RSP11501)
  12. 0.400 JL 3rd Gen Mother (RSP11197)
  13. 0.398 Cherry Blossom (RSP11309)
  14. 0.396 Cherry Blossom (RSP11334)
  15. 0.395 Unknown--Cherry Wine---002- (RSP11269)
  16. 0.395 JL 3rd Gen Mother (RSP11214)
  17. 0.391 CHEM4 (RSP12090)
  18. 0.388 Cherry Blossom (RSP11331)
  19. 0.388 Cherry Blossom (RSP11325)
  20. 0.388 RKM-2018-002 (RSP11093)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346952
Overlapping SNPs:
103
Concordance:
66

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495165
Overlapping SNPs:
11
Concordance:
10

Blockchain Registration Information

Transaction ID
dfbcf4fabcfe5aec1ab8a7541d3cd3ed04917c1b4f573489e4c012b1cc6bc525
Stamping Certificate
Download PDF (842.9 KB)
SHASUM Hash
e2297783d26f02f4ce833f6aa5d45a2523e76326782da72494630ca7238c9241
QR code for RSP10659

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