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Styrofoam Cup x Diesel Truck OG #16

RSP 12972

Grower: Team Elite Genetics

General Information

Sample Name
S X D #16 - 20231207
Accession Date
December 6, 2023
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.3%

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0149

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.399
C90:
0.632

Variants (Select Genes of Interest)
PHL-2 c.932T>C p.Leu311Pro missense variant moderate contig2621 340210

IGV: Start, Jump

T/C
NGS:
0.297
C90:
0.268
PHL-2 c.1057A>G p.Arg353Gly missense variant moderate contig2621 340335

IGV: Start, Jump

A/G
NGS:
0.472
C90:
0.555
PHL-2 c.1096G>A p.Ala366Thr missense variant moderate contig2621 340374

IGV: Start, Jump

G/A
NGS:
0.456
C90:
0.531
PHL-2 c.2564T>A p.Phe855Tyr missense variant moderate contig2621 342607

IGV: Start, Jump

T/A
NGS:
0.483
C90:
0.732
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.611
C90:
0.890
PHL-2 c.2830A>C p.Asn944His missense variant moderate contig2621 342873

IGV: Start, Jump

A/C
NGS:
0.135
C90:
0.000
PHL-2 c.2933G>T p.Arg978Leu missense variant moderate contig2621 342976

IGV: Start, Jump

G/T
NGS:
0.302
C90:
0.297
PHL-2 c.2936T>G p.Val979Gly missense variant moderate contig2621 342979

IGV: Start, Jump

T/G
NGS:
0.174
C90:
0.000
PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.487
C90:
0.713
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.767
C90:
0.880
DXR-2

UniProt

c.1319T>A p.Ile440Asn missense variant moderate contig380 285250

IGV: Start, Jump

A/T
NGS:
0.002
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.437
C90:
0.550
DXR-2

UniProt

c.186A>T p.Arg62Ser missense variant moderate contig380 288577

IGV: Start, Jump

T/A
NGS:
0.016
C90:
0.000
FAD2-2

UniProt

c.172G>T p.Asp58Tyr missense variant moderate contig83 1803197

IGV: Start, Jump

C/A
NGS:
0.226
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.337
C90:
0.000
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.582
C90:
0.493
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.386
C90:
0.000
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.649
C90:
0.938
ELF3

UniProt

c.1230-2_1230-1delAG splice acceptor variant & intron variant high contig97 243676

IGV: Start, Jump

TAG/T
NGS:
0.517
C90:
0.450
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.385
C90:
0.000
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.570
C90:
0.545
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.342
C90:
0.000
ELF3

UniProt

c.2141C>G p.Pro714Arg missense variant moderate contig97 244972

IGV: Start, Jump

C/G
NGS:
0.507
C90:
0.335
ELF3

UniProt

c.2198G>T p.Arg733Leu missense variant moderate contig97 245029

IGV: Start, Jump

G/T
NGS:
0.620
C90:
0.531
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.280
C90:
0.000
aPT4

UniProt

c.216A>T p.Lys72Asn missense variant moderate contig121 2828872

IGV: Start, Jump

A/T
NGS:
0.113
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.582
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.525
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.544
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.522
C90:
0.000
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.273
C90:
0.000
AAE1-2

UniProt

c.688G>A p.Asp230Asn missense variant moderate contig81 209650

IGV: Start, Jump

G/A
NGS:
0.102
C90:
0.000
AAE1-2

UniProt

c.884C>T p.Thr295Ile missense variant moderate contig81 209846

IGV: Start, Jump

C/T
NGS:
0.113
C90:
0.000
AAE1-2

UniProt

c.948_949insA p.Asp317fs frameshift variant high contig81 209910

IGV: Start, Jump

C/CA
NGS:
0.162
C90:
0.000
AAE1-2

UniProt

c.952delC p.Gln318fs frameshift variant high contig81 209912

IGV: Start, Jump

AC/A
NGS:
0.160
C90:
0.000
AAE1-2

UniProt

c.953A>G p.Gln318Arg missense variant moderate contig81 209915

IGV: Start, Jump

A/G
NGS:
0.160
C90:
0.000
AAE1-2

UniProt

c.955C>T p.Arg319Cys missense variant moderate contig81 209917

IGV: Start, Jump

C/T
NGS:
0.158
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.300
C90:
0.000
AAE1-2

UniProt

c.1177G>A p.Asp393Asn missense variant moderate contig81 210139

IGV: Start, Jump

G/A
NGS:
0.089
C90:
0.000
AAE1-2

UniProt

c.1415G>A p.Ser472Asn missense variant moderate contig81 210377

IGV: Start, Jump

G/A
NGS:
0.157
C90:
0.000
AAE1-2

UniProt

c.1417A>G p.Thr473Ala missense variant moderate contig81 210379

IGV: Start, Jump

A/G
NGS:
0.158
C90:
0.000
AAE1-2

UniProt

c.1434G>T p.Glu478Asp missense variant moderate contig81 210396

IGV: Start, Jump

G/T
NGS:
0.163
C90:
0.000
AAE1-2

UniProt

c.1541T>C p.Val514Ala missense variant moderate contig81 210503

IGV: Start, Jump

T/C
NGS:
0.147
C90:
0.000
PHL-1

UniProt

c.2623A>G p.Thr875Ala missense variant moderate contig1439 1487174

IGV: Start, Jump

T/C
NGS:
0.405
C90:
0.000
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.584
C90:
0.861
HDS-1

UniProt

c.136G>A p.Val46Ile missense variant moderate contig1891 889256

IGV: Start, Jump

C/T
NGS:
0.372
C90:
0.593
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.648
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.481
C90:
0.646
PIE1-2

UniProt

c.6773T>C p.Leu2258Ser missense variant moderate contig1460 1184314

IGV: Start, Jump

A/G
NGS:
0.313
C90:
0.675
PIE1-2

UniProt

c.1872T>A p.Asp624Glu missense variant moderate contig1460 1190252

IGV: Start, Jump

A/T
NGS:
0.460
C90:
0.990
PIE1-2

UniProt

c.1630G>C p.Ala544Pro missense variant moderate contig1460 1191600

IGV: Start, Jump

C/G
NGS:
0.386
C90:
0.933
FLD

UniProt

c.2981T>C p.Met994Thr missense variant moderate contig1450 2044012

IGV: Start, Jump

A/G
NGS:
0.494
C90:
0.478
FLD

UniProt

c.2964C>A p.Asp988Glu missense variant moderate contig1450 2044029

IGV: Start, Jump

G/T
NGS:
0.477
C90:
0.464
FLD

UniProt

c.2929T>C p.Phe977Leu missense variant moderate contig1450 2044103

IGV: Start, Jump

A/G
NGS:
0.332
C90:
0.349
FLD

UniProt

c.2686G>A p.Ala896Thr missense variant moderate contig1450 2044848

IGV: Start, Jump

C/T
NGS:
0.271
C90:
0.225
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.258
C90:
0.000
AAE1-3

UniProt

c.199A>G p.Asn67Asp missense variant moderate contig976 1083876

IGV: Start, Jump

T/C
NGS:
0.167
C90:
0.000
AAE1-3

UniProt

c.188A>G p.Asn63Ser missense variant moderate contig976 1083887

IGV: Start, Jump

T/C
NGS:
0.169
C90:
0.000
PIE1-1

UniProt

c.1222C>G p.Gln408Glu missense variant moderate contig1225 2281482

IGV: Start, Jump

C/G
NGS:
0.542
C90:
0.852
GGR

UniProt

c.456T>A p.His152Gln missense variant moderate contig2282 549448

IGV: Start, Jump

T/A
NGS:
0.161
C90:
0.000
GGR

UniProt

c.460G>A p.Asp154Asn missense variant moderate contig2282 549452

IGV: Start, Jump

G/A
NGS:
0.164
C90:
0.000
GGR

UniProt

c.679G>A p.Glu227Lys missense variant moderate contig2282 549671

IGV: Start, Jump

G/A
NGS:
0.076
C90:
0.000
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.382
C90:
0.000
PKSB-3

UniProt

c.1652A>G p.Glu551Gly missense variant moderate contig93 3339759

IGV: Start, Jump

A/G
NGS:
0.215
C90:
0.000

Nearest genetic relatives (All Samples)

closely related moderately related distantly related
  1. 0.135 Styrofoam Cup x Cuban Linx 1 (RSP12984)
  2. 0.161 Gorilla Cookies (RSP11231)
  3. 0.166 Skywalker OG (RSP10837)
  4. 0.168 Styrofoam Cup x Cuban Linx 6 (RSP12982)
  5. 0.169 SFVxTK (RSP11072)
  6. 0.172 Pearadise x Pineapple Pez Melonade 6 (RSP12978)
  7. 0.176 Styrofoam Cup x Cuban Linx 4 (RSP12970)
  8. 0.177 Styrofoam Cup x Orange Juice 5 (RSP12974)
  9. 0.182 Absolute OG (RSP11455)
  10. 0.183 Red Eye OG (RSP11190)
  11. 0.184 Pearadise x Orange Juice 2 (RSP12981)
  12. 0.185 Garlic (RSP11341)
  13. 0.187 Styrofoam Cup x Pineapple Pez Melonade 5 (RSP12979)
  14. 0.190 RKM-2018-034 (RSP11126)
  15. 0.191 NSPM x NSPM (RSP11487)
  16. 0.192 Styrofoam Cup x Fuzzy Melon 11 (RSP12983)
  17. 0.192 Pieface (RSP12794)
  18. 0.192 Styrofoam Cup x Fuzzy Melon 1 (RSP12977)
  19. 0.193 RKM-2018-013 (RSP11104)
  20. 0.195 RKM-2018-026 (RSP11118)

Nearest genetic relatives (Base Tree)

closely related moderately related distantly related
  1. 0.171 Skywalker OG (RSP10837)
  2. 0.196 RKM-2018-034 (RSP11126)
  3. 0.204 RKM-2018-026 (RSP11118)
  4. 0.206 Hermaphrodite ResearchSample2 (RSP11050)
  5. 0.211 Pie Hoe (RSP11073)
  6. 0.226 The Gift (RSP10988)
  7. 0.249 RKM-2018-033 (RSP11125)
  8. 0.264 Blueberry Cheesecake (RSP10680)
  9. 0.266 Hermaphrodite Research Sample1 (RSP11049)
  10. 0.267 RKM-2018-009 (RSP11100)
  11. 0.267 RKM-2018-032 (RSP11124)
  12. 0.269 RKM-2018-002 (RSP11093)
  13. 0.272 RKM-2018-004 (RSP11096)
  14. 0.277 Blueberry Cheesecake (RSP10684)
  15. 0.278 RKM-2018-020 (RSP11112)
  16. 0.280 Kimbo Slice (RSP10997)
  17. 0.290 Recon (RSP10755)
  18. 0.290 Gold Cracker (RSP11048)
  19. 0.292 Liberty Haze (RSP11000)
  20. 0.295 Durban Poison (RSP11014)

Most genetically distant strains (All Samples)

closely related moderately related distantly related
  1. 0.498 Cherry Blossom (RSP11318)
  2. 0.475 Unknown- Cherry Wine - 001 (RSP11268)
  3. 0.470 Cherry Blossom (RSP11323)
  4. 0.455 Cherry Blossom (RSP11274)
  5. 0.453 Cherry Blossom (RSP11328)
  6. 0.451 Cherry Blossom (RSP11325)
  7. 0.451 Wife (RSP11148)
  8. 0.450 Cherry Blossom (RSP11301)
  9. 0.448 Cherry Blossom (RSP11306)
  10. 0.447 Cherry Blossom (RSP11300)
  11. 0.443 Tanao Sri 46 (RSP11486)
  12. 0.443 Unknown- Cherry Wine - 002 (RSP11269)
  13. 0.439 Cherry Blossom (RSP11311)
  14. 0.438 Cherry Blossom (RSP11331)
  15. 0.438 CBD2 V 2 (RSP12669)
  16. 0.437 AVIDEKEL 2 0 (RSP11174)
  17. 0.424 Cherry Blossom (RSP11314)
  18. 0.424 Chematonic Cannatonic x Chemdawg (RSP11394)
  19. 0.424 Jamaican Lion (RSP12916)
  20. 0.423 Cold Weather Cherry (RSP11414)

Most genetically distant strains (Base Tree)

closely related moderately related distantly related
  1. 0.408 Cbot-2019-005 (RSP11133)
  2. 0.405 Cherry (RSP11143)
  3. 0.403 JL yellow (RSP11075)
  4. 0.393 Blueberry Cheesecake (RSP10672)
  5. 0.391 Cherry (RSP11142)
  6. 0.389 Cbot-2019-001 (RSP11129)
  7. 0.373 RKM-2018-028 (RSP11120)
  8. 0.369 RKM-2018-023 (RSP11115)
  9. 0.366 Black Beauty (RSP11035)
  10. 0.364 RKM-2018-006 (RSP11097)
  11. 0.364 Feral (RSP10890)
  12. 0.363 Monoica (RSP10241)
  13. 0.362 Tisza (RSP11044)
  14. 0.361 Carmagnola (RSP11037)
  15. 0.356 Lovrin (RSP10658)
  16. 0.356 Futura 75 (RSP10664)
  17. 0.355 Fedora 17 (RSP10661)
  18. 0.352 RKM-2018-031 (RSP11123)
  19. 0.350 Santhica27 (RSP11047)
  20. 0.350 Cbot-2019-004 (RSP11132)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349281
Overlapping SNPs:
96
Concordance:
62

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
3115e09ab7642f4291a6e2d4a0e1b9006ed445bb23bbd1854e2eb0b0a13b5e81
Stamping Certificate
Download PDF (39.7 KB)
SHASUM Hash
6b929f264d11bc00094b644366c757351fd8c66c1d1f03b5a33749229fc48970
QR code for RSP12972

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