Advanced Strain Search

Jamaican Lion

RSP 12916

Grower: kevin Mckernan

General Information

Sample Name
JL-Fem-Seed-Stem
Accession Date
September 14, 2023
Reported Plant Sex
Female
Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.35%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0203
male female RSP12916

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.2561A>T p.Asn854Ile missense variant moderate contig1439 1487236

IGV: Start, Jump

T/A
NGS:
0.046
C90:
0.612
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
AAE1-3

UniProt

c.667G>A p.Val223Ile missense variant moderate contig976 1083187

IGV: Start, Jump

C/T
NGS:
0.048
C90:
0.000
AAE1-3

UniProt

c.475G>A p.Gly159Arg missense variant moderate contig976 1083550

IGV: Start, Jump

C/T
NGS:
0.048
C90:
0.000
AAE1-3

UniProt

c.416T>C p.Leu139Pro missense variant moderate contig976 1083609

IGV: Start, Jump

A/G
NGS:
0.061
C90:
0.000
AAE1-3

UniProt

c.382T>C p.Tyr128His missense variant moderate contig976 1083643

IGV: Start, Jump

A/G
NGS:
0.072
C90:
0.000
AAE1-3

UniProt

c.296C>T p.Pro99Leu missense variant moderate contig976 1083729

IGV: Start, Jump

G/A
NGS:
0.046
C90:
0.000
AAE1-3

UniProt

c.293A>G p.Asp98Gly missense variant moderate contig976 1083732

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
AAE1-3

UniProt

c.284A>T p.Glu95Val missense variant moderate contig976 1083741

IGV: Start, Jump

T/A
NGS:
0.053
C90:
0.000
AAE1-3

UniProt

c.52G>A p.Gly18Ser missense variant moderate contig976 1084023

IGV: Start, Jump

C/T
NGS:
0.064
C90:
0.000
AAE1-3

UniProt

c.3G>A p.Met1? start lost high contig976 1084072

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.416
GGR

UniProt

c.317C>T p.Pro106Leu missense variant moderate contig2282 549309

IGV: Start, Jump

C/T
NGS:
0.035
C90:
0.220
GGR

UniProt

c.460G>A p.Asp154Asn missense variant moderate contig2282 549452

IGV: Start, Jump

G/A
NGS:
0.070
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.030 JL yellow (RSP11075)
  2. 0.040 JL 3rd Gen Mother (RSP11214)
  3. 0.045 JL 3rd Gen Mother (RSP11197)
  4. 0.054 Jamaican Lion (RSP12917)
  5. 0.110 Jamaican Lion (RSP12915)
  6. 0.163 JL 4th Gen 1 (RSP11193)
  7. 0.183 JL 4th Gen 2 (RSP11194)
  8. 0.183 JL 4th Gen 5 (RSP11199)
  9. 0.200 JL 4th Gen 6 (RSP11200)
  10. 0.200 JL 4th Gen 4 (RSP11198)
  11. 0.203 JL 4th Gen 3 (RSP11195)
  12. 0.228 Jamaican Lions Ancestor (RSP11127)
  13. 0.243 JL x NSPM1 4 (RSP11482)
  14. 0.250 JL X NSPM1 12 (RSP11472)
  15. 0.271 JL 4th Gen 7 (RSP11153)
  16. 0.281 Jamaican Lion (RSP12919)
  17. 0.282 Jamaican Lion (RSP12913)
  18. 0.293 JL X NSPM1 8 (RSP11470)
  19. 0.293 Jamaican Lion (RSP12920)
  20. 0.298 JL Tent 4 (RSP11491)

Most genetically distant strains (All Samples)

0 0.142 0.283 0.425 0.567
closely related moderately related distantly related
  1. 0.562 Purple Urkle (RSP12890)
  2. 0.559 GMO x Poison Momosa (RSP12626)
  3. 0.557 JL Cross 14 (RSP11515)
  4. 0.544 JL Cross 6 (RSP11507)
  5. 0.538 HM (RSP12940)
  6. 0.533 CS (RSP11208)
  7. 0.533 BagSeed (RSP12627)
  8. 0.528 Cherry Blossom (RSP11335)
  9. 0.527 HM (RSP12941)
  10. 0.527 Cherry Blossom (RSP11308)
  11. 0.524 Wedding Cake x MAC (RSP11464)
  12. 0.522 80E (RSP11213)
  13. 0.520 CDSD (RSP12929)
  14. 0.520 Deadhead OG (RSP11463)
  15. 0.517 80E (RSP11211)
  16. 0.517 Cherry Blossom (RSP11333)
  17. 0.516 Fatso (RSP11741)
  18. 0.514 SLH C3 (RSP12943)
  19. 0.513 CHEM4 (RSP12090)
  20. 0.512 JL Cross 10 (RSP11511)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349049
Overlapping SNPs:
82
Concordance:
51

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495202
Overlapping SNPs:
1
Concordance:
1

Blockchain Registration Information

Transaction ID
5272dafb454d7d89033c5a5214252b12cb455dee5ccf8f38ba22734f82f7fea4
Stamping Certificate
Download PDF (39.1 KB)
SHASUM Hash
1f5ef68784dbb534796cdece52ff2708a2317f20a120235ccba106543b7a1707
QR code for RSP12916

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